Table 23.

Reference sequences recommended for phylogenetic analysis of HBV genotyping.

Genotype A
A1	AB116082, AF418685, AF418689, FJ692566, AF418683, FJ692570, FJ692583, FJ692586, AB246317, JN182323, JN182326, AF297623, GU563545, AF297625, HQ646555, HQ646556, FJ692573, AY233275, AF297621, U87742, AY233290, AY233279
A2	AF143304, AF143306, DQ298163, GQ477469, EU859908, EU859927, GQ477500, FJ904411, EU859952
A3	AM184125, AB194952, HM363613, FN545825, FJ692555, FJ692599, FJ692609, FJ692608, FJ692611, FN545829, FN545840, FN545832, FN545839, FN545833, FN545837, GQ161813, FJ349296, FN545826

Genotype B
B1	AB073847, AB300371, AB073849, AB073856, AB642101, AB073858, AB302095, AB106884, AB073853, AB642093
B2	AF461360, HM011504, EU939638, EU939660, GQ377638, HM011475, EU939636, FJ386648, EU579441, EU939675, JQ027313, EU547563, HM011466, FJ518811, FJ562262, GQ924630, DQ995804, FJ899790, EU939661
B3	AB219427, AB241116, GQ924640, AB219430, GQ924617, JQ027328, JQ429079, EU660230, GQ358140, GQ924628, GQ924639, GQ924641, DQ361535, EU331000, GQ358144, GQ358145, HM011487, GQ924621, GQ924635, AY800392, GQ924656, GQ358150
B4	GQ924626
B5	AB287320, DQ463799, DQ463802, JN792899, JN792901

Genotype C
C1	AB074047, GQ924619, GQ924623, GQ924642, EU306686, JQ801522, AB117758, JQ801508, JN827425, JQ801518, DQ315782, JQ027326, JQ429078, EU498227, GQ358154, AB112063, AY167092, FJ904423, DQ089762, DQ089768, AY217376, AY217378, DQ089772, EU305542, AY217372, HM011486, DQ089790, DQ089776, DQ089785, DQ089780, EU872005, JQ040133, GQ377631, EU547559, FJ562300
C2	AB042285, AB205124, AB471851, D16665, AB042282, GQ475343, AB367405, GQ475326, AB367392, AB111112, AB111113, AB300369, GQ377593, FJ386645, AB367409, AB195948, AB367421, AB367413, AB367429, AY641563, EF137803, GQ475342, AB697510, AB298721, M38636, GQ475335, EU939547, FJ562320, FJ787490, EU939552, FJ386617, JQ040135, FJ386625, AB113877, B485809, EU589344, EU589346, FJ899767, FJ787487, FJ787488, EU939536, FJ386626, FJ899783, EU939539, GQ227695, J562273, GQ377563, FJ899775, B113878, AB250109, AB367420, AB367425, FJ899788, GQ372968, EU589340, FJ562317, FJ386622, EU939617, FJ386611, JF436919, AB367415, DQ993690, HM011479, AY206378, EU919165, HM011481, EU660225, EU660226, EU881995, EU919166, DQ089794, GQ475353, EU306717, EU306718, FJ032347, FJ032348, FJ787469, JQ040129, FJ899794, EU547562, FJ562326, JX504540, FJ562255, EU554540, EU939601, FJ899768, JQ027322, GQ377548, AY057947, EU560438, EU560439, EU939641, EU939643, EU787444, EU939541, EU939558, AB365452, AB697502, FJ032343, EU939564, EU939657, FJ562271, FJ787463, FJ562249, AF384372, EU560441, EU939655, FJ562293, FJ386677, AY220700, EU717213, FJ386594, EU939602, AB367428, FJ386580, FJ386651, FJ562336, EU939572, GQ377642, JQ040162, FJ386678, EU939574, EU939596, EU939659, FJ899770, JX026885, FJ562339, FJ562239, DQ986375, AF458665, EU796070, FJ787440, DQ089800, FJ787483, JQ040159, EU939568, FJ787456, FJ386640, FJ562248, FJ386612, FJ562302, EU939554, EU939580, FJ562241, HQ638218, FJ386586, FJ562245
C3	AB115417, AB115418, AY167091, AB367431, FJ562298, JQ027332, DQ089802, EU882006
C4	AB675675, AY206374, EU939624, AY206376, EU939625, GQ358158
C5	AP011100, GQ924657, GQ924620, JN827415
C6	AB048705, AB493838, AB493843, AP011103, AP011102, GQ358157, AP011106, AP011108, GU721029

Genotype D
D1	AB188244, JN040787, AB270540, J904431, EU787440, GQ358159, EF103280, FJ904429, JF754626, JN040782, JN642133, JF754588, JF754622, JN642157, GU456684, JF754606, GU456648, AB270549, FJ904426, GU456677, DQ486023, X80924, EU787438, JN642136, JN040781, JN642128, JF754609, JF754617, JF754612, JN257195, GU456665, GU456674, GU456676, GU456678, JN040766, JN257214, GU456669, JN040760, JN040762, JN040768, JN040773, AB583681, GQ184322, AY236163, JN257211, N257212, JN257213, DQ304548, GQ183466, JN040752, JN040772, AY741798, GU456638, JN040818, GU456642, GU456644, GU456645, GU456647, GU456651, JN040820, JN040800, JN040812, JF754602, JF754632, JF754586, JF754611, JN257154, JN257158, JN257217, JN257207, JN642154, JF754608
D2	AB188241, GQ477453, GQ477456, AB205128, AY090452, JF754597, JF754621, FJ349206, GQ477454, JN642148, JN642162, JN642163, JN664944, GU456635, AB555500, AB555501, JN792905
D3	AB188243, AB270537, FJ692506, DQ329356, DQ486025, FJ349211, FJ349221, EU594435, FJ349213, GQ922000, JF754625, AB493848, EU921419, DQ315777, FJ562338, JX898692, EU939680, AB270538
D4	AB033559, FJ692533, GQ922004, GQ922005
D5	DQ315780, JN664929, GQ205381, JN664933, JN664934, JN664947, JN664923
D6	AM494716, FJ904397, FJ904428, FJ904439, FJ904436, FJ904414, FJ349207, FJ904400, FJ904425, FJ904433

Genotype E
E	AB219533, DQ060829, GQ161805, EU239220, GQ161774, AB219534, HM363611, HM363583, FN545824

Genotype F
F1	EU670261, HM590472, FJ589065
F2	DQ899142, DQ899144
F3	AB036905, FJ589068, DQ899150
F4	AB214516, JQ272888, AB365453, HE981178

Genotype G
G	AB056516, AB375169

Genotype H
H	AB275308

Genotype I
I	EU835240, FJ023667, FR714496

Genotype J
J	AB486012

non-human primates
non-human primates	AB037928, AY781185, AY781181, AY781183, AJ131574, AY077736, HQ603058, HQ603059, FM209516, HQ603080, AJ131571, HQ603077, AY330915, FM209512, FM209513, AY330917, FM209514, AF242586, D00220, JQ664505, AJ131567, AM117396, AY330911, FJ798098