Table 5.
Statistics of Fig. 1.
| Clade | Number of Sequences | Failed to genotyping | Failed to subgenotyping | Inconsistent subgenotyping within clade |
|---|---|---|---|---|
| D4 | 4 | 1 | ||
| D7 | 11 | 3 | 1(D/E Rec) | |
| D2 | 17 | 8 | ||
| D1 | 72 | 2 | 20 | |
| D? | 2 | 2 | ||
| D3/6 | 18 | 11 | 1(D6) | |
| D5 | 7 | 6 | ||
| E | 9 | |||
| G | 3 | 1(G/C Rec) | ||
| J | 1 | |||
| C2-part1 | 148 | 17 | 33 | 3(B2, C1×2) |
| C2-part2 | 8 | 1 | 4 | |
| C1-part1 | 37 | 1 | 10 | 4(C/A Rec ×2, C/A/B Rec, C/G Rec) |
| C1-part2 | 4 | 1 | 2(C2×2) | |
| C? | 6 | 5 | ||
| C6/C7 | 9 | 2 | 1(C7) | |
| C5 | 4 | |||
| A1 | 22 | 3 | 5 | |
| A3 | 5 | 1 | ||
| A5 | 5 | |||
| A7 | 6 | |||
| A3? | 3 | 1 | ||
| A2/A6 | 9 | 3 | ||
| I | 4 | |||
| B1 | 10 | 2 | ||
| B2 | 21 | 1 | 9 | 2(B/C Rec ×2) |
| B4 | 1 | |||
| B5 | 3 | |||
| B3/B7/B8 | 22 | 1 | 6 | 4(B/C Rec ×4) |
| B9 | 1 | |||
| B6 | 5 | 2 | ||
| F3 | 3 | 1 | ||
| F4 | 4 | 2(F/D Rec, F/G Rec) | ||
| F2 | 2 | |||
| F1 | 3 | |||
| H | 1 |
Rec, recombinant strain.