Table 4.
Running time and peak memory
| Dataset | Running time | Peak memory (G) | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| SSPACE-LR | LINKS | npScarf | SLR | SSPACE-LR | LINKS | npScarf | SLR | |||
| E. coli_1_SMRT | 41m42s | 1m42s | 26m34s | 26m58s | 1.00 | 6.23 | 10.28 | 1.04 | ||
| E. coli_2_SMRT | 42m12s | 1m42s | 26m46s | 28m17s | 1.00 | 6.22 | 10.28 | 1.17 | ||
| S. cerevisiae_1_SMRT | 880m22s | 38m26s | 929m36s | 907m23s | 3.96 | 93.27 | 10.28 | 1.86 | ||
| S. cerevisiae_2_SMRT | 1162m28s | 40m35s | 1012m27s | 957m59s | 3.96 | 93.3 | 10.28 | 3.60 | ||
| Chr X_1_SMRT | 8413m53s | 41m2s | 6617m53s | 7782m13s | 12.56 | 114.2 | 12.82 | 3.98 | ||
| E. coli_1_ONT | 46m25s | 2m22s | 28m6s | 26m57s | 1.02 | 8.60 | 10.28 | 1.05 | ||
| E. coli_2_ONT | 47m57s | 2m25s | 28m17s | 28m42s | 1.01 | 8.60 | 10.28 | 1.11 | ||
| S. cerevisiae_1_ONT | 676m26s | 41m20s | 962m51s | 1001m25s | 3.43 | 117.97 | 10.28 | 1.84 | ||
| S. cerevisiae_2_ONT | 830m48s | 40m54s | 1046m16s | 1051m53s | 3.52 | 117.99 | 10.28 | 3.47 | ||