Fig 9. Parameterization of self-avoiding heteropolymer.
a) 〈Rg〉 vs 〈Retoe〉 for each blob of V66 sequence. Blobs are colored according to the Das and Pappu diagram in Fig 1c. Statistical error was smaller than the circles used for the representation of each blob. b) The distribution of normalized excess distances across all blob-pairs in the V66 RP, where |i − j| > 1. c) Relationship between the radius of gyration Rg,i, end to end distance Retoe,j, and excess distance dij, calculated for each blob or blob pair using a RP trajectory. d) The SAHP is a chain with each monomer representing a blob of the RP and modeled as a hard sphere. Each monomer i has radius aRg,i and is separated from monomer i + 1 by bond length (Retoe,i + Retoe,i+1)/2. Bond lengths are constrained and bond angles can rotate freely.