Table 3.

Routine Microbiology Data About Isolates

Sample	Body Site	Date Isolated	Colony Morphotype	VNTR Profile	Phenotypic Susceptibility
patient_1_S1	Sputum	-166 days	Rough	I	Amikacin-S; Cipro-R; Clarithromycin-R; Doxycycline-R; Augmentin-R
patient_1_S2	Lung tissue	0 days	Rough	I	Amikacin-PR; Cipro-R; Clarithromycin-R; Doxycycline-R; Linezolid-R; Co-trem-R; Cefotaxime-R
patient_1_S3	Sputum	10 days	Smooth	I	n/a
patient_1_S4	Sputum	15 days	Rough	I	n/a
patient_1_S5	Pleural fluid	21 days	Smooth	I	n/a
patient_1_S6	Pleural fluid	38 days	Rough	I*	n/a
patient_1_S7	Pleural fluid	38 days	Rough	I*	n/a
patient_1_S8	Pleural fluid	40 days	Smooth	I*	n/a
patient_1_S9	BAL	42 days	Smooth	I*	n/a
patient_1_S10	Pleural fluid	49 days	Smooth	I*	n/a
patient_1_S11	Pleural fluid	49 days	Smooth	I*	n/a
patient_1_S12	Pleural fluid	49 days	Smooth	I*	n/a
patient_1_S13	Chest wound swab	49 days	Smooth	I / I*	n/a
patient_1_S14	Chest wound swab	49 days	Smooth	I	n/a
patient_1_S15	Sputum	51 days	Smooth	I / I *	n/a
patient_1_S16	Chest wound swab	56 days	Rough	I	n/a
patient_2_S1	Sputum	−121 days	Rough	n/a	Amikacin-R; Cipro-R; Clarithromycin-R; Doxycycline-R; Linezolid-R; Co-trem-R; Cefotaxime-R
patient_2_S2	Sputum	−81 days	Smooth	I	n/a
patient_2_S3	Lymph node tissue	0 days	Rough	I	n/a
patient_2_S4	Lymph node tissue	0 days	Smooth	n/a	n/a
patient_2_S5	Lymph node tissue	0 days	Rough	I	n/a
patient_2_S6	Lung tissue	0 days	n/a	I	n/a
patient_2_S7	Sputum	14 days	Smooth	n/a	n/a
patient_2_S8	BAL	27 days	Smooth	I	n/a
patient_2_S9	Pleural fluid	33 days	Smooth	I	n/a
patient_2_S10	BAL	41 days	Smooth	I / I*	n/a
patient_2_S11	Pleural fluid	42 days	Smooth	I	n/a
patient_2_S12	Pleural fluid	42 days	Smooth	I	Amikacin-R; Ciprofloxacin-R; Clarithromycin-R; Doxycycline-R; Linezolid-R; Co-trimoxazole-R; Cefoxitin-R; Tobramycin-R; Moxyfloxacin-R
patient_2_S13	Drain site swab	49 days	Smooth	n/a	n/a
patient_2_S14	Pleural fluid	50 days	Smooth	n/a	n/a
patient_2_S15	Pleural fluid	58 days	Smooth	I	n/a
patient_2_S16	Pleural fluid	59 days	Smooth	n/a	n/a

Dates are relative to the date of transplant for each patient. An asterisk (*) indicates that the VNTR profile differed at 1 locus. Phenotypic susceptibility was available for a minority of isolates.

Abbreviations: BAL, bronchoalveolar lavage; n/a, data not available; -PR, partially resistant; -R, resistant; -S, susceptible; VNTR, variable nucleotide tandem repeat.