Table 3.
Real datasets summary whole genome (AUC)
| Sample | SNV/InDel | OVarCall | OHVarfinDer | HapMuC | Strelka | MuTect | VarScan2 | #SNV/InDel | #Error |
|---|---|---|---|---|---|---|---|---|---|
| HCC1143_n20t80 | SNV | 0.869 | 0.906 | 0.827 | 0.873 | 0.848 | 0.801 | 10 618 | 2327 |
| HCC1143_n40t60 | 0.870 | 0.901 | 0.824 | 0.877 | 0.855 | 0.799 | 8517 | 2049 | |
| HCC1143_n60t40 | 0.884 | 0.912 | 0.843 | 0.901 | 0.876 | 0.814 | 5450 | 1684 | |
| HCC1143_n80t20 | 0.901 | 0.941 | 0.870 | 0.938 | 0.918 | 0.830 | 1874 | 1451 | |
| HCC1954_n20t80 | 0.882 | 0.934 | 0.852 | 0.903 | 0.869 | 0.862 | 10 653 | 2854 | |
| HCC1954_n40t60 | 0.893 | 0.941 | 0.852 | 0.917 | 0.880 | 0.858 | 7969 | 2327 | |
| HCC1954_n60t40 | 0.917 | 0.949 | 0.865 | 0.937 | 0.905 | 0.852 | 4638 | 1770 | |
| HCC1954_n80t20 | 0.941 | 0.970 | 0.880 | 0.972 | 0.942 | 0.848 | 1389 | 1404 | |
| Total | 0.895 | 0.935 | 0.860 | 0.913 | 0.886 | 0.852 | 51 108 | 15 866 | |
| HCC1143_n20t80 | InDel | 0.707 | 0.796 | 0.678 | 0.713 | — | 0.722 | 926 | 4951 |
| HCC1143_n40t60 | 0.733 | 0.814 | 0.700 | 0.755 | — | 0.748 | 617 | 4761 | |
| HCC1143_n60t40 | 0.760 | 0.834 | 0.723 | 0.784 | — | 0.778 | 328 | 4563 | |
| HCC1143_n80t20 | 0.809 | 0.855 | 0.770 | 0.816 | — | 0.800 | 94 | 4899 | |
| HCC1954_n20t80 | 0.800 | 0.860 | 0.771 | 0.822 | — | 0.825 | 1771 | 5219 | |
| HCC1954_n40t60 | 0.821 | 0.866 | 0.778 | 0.843 | — | 0.835 | 1172 | 5215 | |
| HCC1954_n60t40 | 0.819 | 0.863 | 0.770 | 0.848 | — | 0.831 | 607 | 5200 | |
| HCC1954_n80t20 | 0.815 | 0.887 | 0.777 | 0.864 | — | 0.823 | 159 | 5053 | |
| Total | 0.777 | 0.838 | 0.774 | 0.794 | — | 0.792 | 5674 | 39 861 |
The highest AUC values are written in italic letters.