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. 2019 Oct 31;6:250. doi: 10.1038/s41597-019-0216-1

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© The Author(s) 2019

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Fig. 4 — Comparison of transcriptomics responses in potato-PVY interaction through time. (a) Venn diagrams of differentially expressed (DE) genes in three different genotype/leaf type combinations (Désirée bottom, NahG-Désirée bottom and Désirée upper leaves) and for two normalisations (RNS and quantile). (b) Venn diagrams of differentially expressed (DE) genes in virus versus mock treated plants in bottom leaves of cv. Désirée and NahG-Désirée genotypes at 1, 3, 4, 5 and 7 dpi. (c) DE genes for upper non-inoculated leaves are shown for Désirée plants at 1, 3, 4, 5, 7, 8, 9 and 11 dpi. The values represent statistically significant differentially expressed genes as determined by empirical Bayes method (n = 3, FDR p-value < =0.05, |logFC| > =0.8). (d) Coverage of the two potato genome models (ITAG, PGSC) by the POCI microarray features.