Table 3.
Quality control metrics summary of the WGBS data derived from blood samples of 10 PGP-UK participants.
| Sample ID | Median Coverage |
Bases ≥30X |
Duplicated Reads, % | GC Content, % | ||
|---|---|---|---|---|---|---|
| Read 1 | Read 2 | Read 1 | Read 2 | |||
| uk35C650 | 10.0X | 15% | 27.3% | 13.3% | 26% | 29% |
| uk2E2AAE | 15.0X | 20% | 39.4% | 20.3% | 24% | 27% |
| uk2DF242 | 16.0X | 23% | 28.0% | 12.4% | 24% | 27% |
| uk740176 | 15.0X | 20% | 25.8% | 12.6% | 25% | 27% |
| uk33D02F | 16.0X | 20% | 26.3% | 13.1% | 24% | 27% |
| uk0C72FF | 14.0X | 18% | 26.8% | 11.4% | 25% | 28% |
| uk1097F9 | 14.0X | 15% | 26.0% | 10.8% | 24% | 27% |
| uk174659 | 14.0X | 17% | 27.1% | 15.5% | 24% | 27% |
| uk85AA3B | 16.0X | 19% | 28.3% | 14.9% | 24% | 27% |
| uk481F67 | 15.0X | 25% | 31.6% | 17.4% | 26% | 29% |
The table contains median coverage depth, percentage of bases covered with at least 30X depth, as well as duplicated reads and GC contents percentages for both forward and reverse reads for each sample.