TABLE 3.
Top 10 most significant SNP-gene pairs identified by our cis-eQTL analysis.
| SNP | CHR | Associated gene | Statistic | p-value | FDR | Beta |
| rs12453 | 11 | MS4A6A | 10.1568 | 9.02e-23 | 8.14e-19 | 0.132 |
| rs7926354 | 11 | MS4A6A | 10.0141 | 3.24e-22 | 1.37e-18 | 0.1298 |
| rs7232 | 11 | MS4A6A | 9.9752 | 4.57e-22 | 1.37e-18 | 0.1302 |
| rs7926344 | 11 | MS4A6A | 9.7366 | 3.73e-21 | 8.40e-18 | 0.1269 |
| rs4938933 | 11 | MS4A6A | 9.6392 | 8.68e-21 | 1.50e-17 | 0.1272 |
| rs7929589 | 11 | MS4A6A | 9.6231 | 9.97e-21 | 1.50e-17 | 0.1259 |
| rs1530914 | 11 | MS4A6A | 9.5625 | 1.68e-20 | 2.17e-17 | 0.1255 |
| rs6591559 | 11 | MS4A6A | 9.5333 | 2.16e-20 | 2.44e-17 | 0.1253 |
| rs610932 | 11 | MS4A6A | 9.3276 | 1.24e-19 | 1.25e-16 | 0.1222 |
| rs611267 | 11 | MS4A6A | 8.997 | 1.95e-18 | 1.76e-15 | 0.118 |