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. 2019 Oct 25;11:297. doi: 10.3389/fnagi.2019.00297

TABLE 5.

Top 10 identified gene ontology categories from PANTHER overrepresentation test of our eQTL analysis results, according to fold enrichment.

Gene ontology biological process category # Ref genes # Genes Expected Fold enrichment p-value
Negative regulation of viral process (GO:0048525) 99 46 20.25 2.27 5.16e-03
Regulation of viral genome replication (GO:0045069) 94 42 19.23 2.18 3.95e-02
Regulation of viral life cycle (GO:1903900) 144 64 29.46 2.17 1.88e-04
Negative regulation of multi-organism process (GO:0043901) 180 75 36.82 2.04 1.68e-04
Regulation of symbiosis, encompassing mutualism through parasitism (GO:0043903) 231 92 47.25 1.95 3.77e-05
Regulation of viral process (GO:0050792) 202 80 41.32 1.94 4.64e-04
Neutrophil activation (GO:0042119) 496 188 101.46 1.85 3.76e-11
Neutrophil activation involved in immune response (GO:0002283) 487 184 99.62 1.85 9.77e-11
Granulocyte activation (GO:0036230) 501 189 102.49 1.84 4.86e-11
Neutrophil degranulation (GO:0043312) 483 182 98.8 1.84 1.72e-10

# Ref genes: the number of genes in the reference list that map to this particular annotation data category. #Genes: the number of genes in our eQTL analysis identified gene list that map to this annotation data category. Expected: the number of genes we would expect in our gene list for this category, based on the reference list. Fold enrichment: # Genes/Expected. p-value: Bonferroni-corrected p-value.