Table 2.

Table showing quality control metrics for whole-genome sequencing

Sequence metrics	Sequencing method	Whole-genome sequencing
	Tumor coverage	35.6×
	Normal coverage	31.09×
	Additional text	Duplicate read rate < 10%
Processing	Alignment	BWA v2.0.54
	Substitutions	CaVEMan v1.11.2
	Indels	Pindel v2.2.2
	Rearrangements	Brass v5.4.1
	Copy number	ASCAT (NGS) v4.0.1
Raw data	Substitutions	805,261
	Indels	1007
	Rearrangements	11
Ploidy	1.85
Aberrant cell fraction	0.35