Table 3.

Potential single-nucleotide polymorphisms (SNPs) and candidate genes detected in the genome-wide association study for four porcine reproduction traits.

Traits	SNP	Chromosome	Position	p-Value	Allele Frequency	Allele Substitution Effect	Candidate Gene b
LSB	rs336638152	5	9006723	9.09 × 10−5	0.398	−0.117	Thioredoxin 2 (TXN2)
	rs80999110	5	67782650	6.73 × 10−5	0.438	−0.118	Potassium voltage-gated channel subfamily A member 1 (KCNA1)
	rs81318862	6	76074229	8.29 × 10−5	0.109	−0.187	ENSSSCG00000003546
	rs329711941	6	77726418	8.28 × 10−5	0.107	−0.187	Zinc finger DHHC-type containing 18 (ZDHHC18)
	rs81439394	12	10118697	2.53 × 10−5	0.290	−0.141	Mitogen-activated protein kinase 6 (MAP2K6)
	rs80979042	14	66823174	1.69 × 10−5	0.479	−0.140	BICC1 (BICC1)
	rs80825112	14	66854605	1.69 × 10−5	0.479	−0.140	BICC1
LWB	rs325089329	4	5662747	1.06× 10−4	0.155	−0.345	Family with sequence similarity 135 member B (FAM135B)
	rs329734169	4	5677434	1.06× 10−4	0.155	−0.345	FAM135B
	rs81476258	6	68258924	5.85 × 10−5	0.407	0.276	EPH receptor B2 (EPHB2)
	rs81326131	6	74780466	5.85 × 10−5	0.407	0.276	EPHB2
	rs332491771	14	1176591	3.18 × 10−5	0.413	0.251	Semaphorin 4D (SEMA4D)
LWW	rs80808642	4	7289023	8.01 × 10−6	0.480	−1.629	ST3 beta-galactoside alpha-2,3-sialyltransferase 1 (ST3GAL1)
	rs81427863	10	7002238	5.98 × 10−5	0.215	−1.718	Potassium channel tetramerization domain containing 3 (KCTD3)
	rs322567083	10	7029718	5.98 × 10−5	0.215	−1.718	KCTD3
	rs81428034	10	7059506	5.98 × 10−5	0.215	−1.718	KCTD3
	rs328230332	17	39032680	7.50 × 10−5	0.100	2.338	Family with sequence similarity 110 member A (FAM110A)
LSW	rs339777110	14	27027253	3.12 × 10−5	0.168	0.032	Transmembrane protein 132D (TMEM132D)
	rs80947288	14	39275817	8.41 × 10−5	0.259	0.025	T-box 3 (TBX3)
	rs328230332	17	39032680	5.12 × 10−5	0.100	0.038	FAM110A

^b: The SNP-containing or nearest annotated genes for each potential SNP.