Table 2.
Characteristics of the CSIs specific for the nematode suborder Rhabditoidea and class Chromadorea.
| Protein Name |
C. elegans Gene Name |
Accession No. | Figure (Fig. Sup) No. | Indel Size | Indel Position | Specificity |
|---|---|---|---|---|---|---|
| Cleavage Factor Im homolog | cfim-2 | NP_001255355 | Figure S40 | 2 aa ins | 87–130 | Rhabditoidea |
| Methyl-CpG-binding protein | mbd-2 | NP_001021012 | Figure S41 | 2 aa ins | 158–200 | |
| Abnormal cell migration protein 13 | mig-13 | NP_001024660 |
Figure 3
Figure S42 |
2 aa ins | 71–105 | |
| PAX3- and PAX7 binding protein 1 | F43G9.12 | NP_001250840 | Figure S43 | 1 aa del | 126–164 | |
| tRNA (guanine-N(1)-)-methyltransferase | F46F11.10 | NP_491647 | Figure 4 | 4 aa ins | 632–669 | Chromadorea |
| Palmitoyltransferase a | spe-10 | KHJ83757 | Figure S44 | 1 aa del | 234–270 | |
| Palmitoyltransferase | spe-10 | KHJ83757 | Figure S45 | 2 aa del | 255–282 | |
| Battenin | cln-3.3 | EGT30700 | Figure S46 | 3 aa ins | 162–194 | |
| ETS (E26 transformation-specific) class transcription factor | ets-5 | KJH47557 | Figure S47 | 1 aa ins | 122–155 | |
| Heterogeneous nuclear ribonucleoprotein A1 * | H28G03.1 | KJH46562 | Figure S48 | 1 aa ins | 93–122 | |
| Heterogeneous nuclear ribonucleoprotein A1 * | H28G03.1 | XP_013302959 | Figure S49 | 5 aa del | 139–171 | |
| Regulator of G-protein signaling 7 a | Cbn-rgs-7 | EGT30339 | Figure S50 | 1 aa ins | 221–252 | |
| Na(+)/H(+) Exchange Regulatory Factor * | nrfl-1 | NP_001294068 |
Figure 5
Figure S51 |
1 aa ins | 210–245 | Nematoda |
* Two isoforms of this protein are present in Rhabitida species. a These CSIs are not found in Strongyloides ratti, which branches deeply in comparison to the other Chromadorea species.