Table 5.

Accuracies obtained for breeds A–E with larger Ne using 9k and 45k SNP markers¹

		Single breed		Multibreed shared		Multibreed nonshared
SNP density	Breed	Acc	SE	Acc	SE	Acc	SE
9k	Breed A	0.61	0.01	0.51	0.01	0.62	0.01
	Breed B	0.63	0.01	0.52	0.03	0.61	0.00
	Breed C	0.63	0.03	0.49	0.06	0.63	0.04
	Breed D	0.70	0.02	0.60	0.04	0.69	0.01
	Breed E	0.60	0.01	0.49	0.03	0.59	0.01
	Average	0.64	0.01	0.52	0.04	0.63	0.02
45k	Breed A	0.65	0.02	0.66	0.02	0.65	0.02
	Breed B	0.66	0.00	0.66	0.01	0.65	0.00
	Breed C	0.73	0.03	0.71	0.03	0.73	0.04
	Breed D	0.76	0.01	0.75	0.01	0.74	0.01
	Breed E	0.60	0.01	0.60	0.01	0.60	0.01
	Average	0.68	0.01	0.68	0.02	0.67	0.02

¹Single-breed evaluations were performed as well as multibreed. For multibreed, SNP effects were first assumed to be the same in a shared scenario and then SNP effects were treated as different in a nonshared scenario.