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. Author manuscript; available in PMC: 2020 Dec 1.
Published in final edited form as: Genet Epidemiol. 2019 Aug 21;43(8):1018–1029. doi: 10.1002/gepi.22252

Table 5. Cumulative infiltration by multiple cell-types and BMI.

Cumulative mED (cmED) scores, weighted by cell-specific effect estimates obtained from the pooled data, are associated with BMI across all cohorts, and after pooling.

Full Panela Validated CTsb Joint-Lasso CTsc

Effect SE P Rm2 Effect SE P Rm2 Effect SE P Rm2
LEAP 1.136 0.210 2.7E-07 0.175 0.710 0.254 0.006 0.051 1.135 0.204 1.4E-07 0.177
GSE67024 0.881 0.232 3.2E-04 0.128 1.630 0.455 0.001 0.142 1.051 0.250 7.9E-05 0.159
GSE61450 1.761 0.394 1.4E-04 0.427 2.545 0.446 5.3E-06 0.540 1.761 0.394 1.4E-04 0.427
Pooled* 2.058 0.503 5.9E-05 0.423 0.882 0.525 0.094 0.394 1.752 0.508 0.001 0.412

Panels for each cmED analysis included:

a

all twelve cell-types

b

CD4, monocytes, and dendritic cell-types

c

immature B, plasma B, Memory B, monocytes, aNK, CD4, dendritic, CD8, granulocytes, and NK cell-types.

SE: standard error;Rm2: marginal R-squared value; CTs: cell-types

*

includes a cohort effect in the model.