Table 5. Cumulative infiltration by multiple cell-types and BMI.
Full Panela | Validated CTsb | Joint-Lasso CTsc | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
Effect | SE | P | Effect | SE | P | Effect | SE | P | ||||
LEAP | 1.136 | 0.210 | 2.7E-07 | 0.175 | 0.710 | 0.254 | 0.006 | 0.051 | 1.135 | 0.204 | 1.4E-07 | 0.177 |
GSE67024 | 0.881 | 0.232 | 3.2E-04 | 0.128 | 1.630 | 0.455 | 0.001 | 0.142 | 1.051 | 0.250 | 7.9E-05 | 0.159 |
GSE61450 | 1.761 | 0.394 | 1.4E-04 | 0.427 | 2.545 | 0.446 | 5.3E-06 | 0.540 | 1.761 | 0.394 | 1.4E-04 | 0.427 |
Pooled* | 2.058 | 0.503 | 5.9E-05 | 0.423 | 0.882 | 0.525 | 0.094 | 0.394 | 1.752 | 0.508 | 0.001 | 0.412 |
Panels for each cmED analysis included:
all twelve cell-types
CD4, monocytes, and dendritic cell-types
immature B, plasma B, Memory B, monocytes, aNK, CD4, dendritic, CD8, granulocytes, and NK cell-types.
SE: standard error;: marginal R-squared value; CTs: cell-types
includes a cohort effect in the model.