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Comparing estimated contamination against call rates in 22,201 Michigan Genomics Initiative samples that had average array probe intensity (defined as log2 R ratio) greater than a cutoff set at 2 standard deviations below the mean. Left: VICES. Center: BAFRegress. Right: VerifyIDintensity. In all three plots, the red triangles denote the samples that had a contaminating sample detected by our method.
