Table 4.
Interactions between BVM, 14a, and HIV-1 CA CTD-SP1 protein.
Protein | Ligand | Interaction | |||
---|---|---|---|---|---|
Name | Chain: Residue | Name | Residue | Type | Distance [Å] |
CTD-SP1 (5I4T) | I:Lys227 | BVM | carboxylate | salt bridge | 1.90 |
J:Lys227 | carboxylate | attractive charge | 3.67 | ||
I:Pro224 | C-21 of betulin | carbon–hydrogen bond | 2.90 | ||
J:Lys227 | carboxylate | alkyl–alkyl | 2.11 | ||
L:Gly223 | carboxylate | alkyl–alkyl | 2.30 | ||
G:Lys158 | C-21 of betulin | alkyl–alkyl | 4.69 | ||
L:Pro224 | C-21 of betulin | alkyl–alkyl | 5.41 | ||
L:Lys158 | C-25 of betulin | alkyl–alkyl | 5.28 | ||
K:Lys158 | C-29 of betulin | alkyl–alkyl | 3.67 | ||
K:Lys158 | C-30 of betulin | alkyl–alkyl | 3.89 | ||
G:Lys158 | C-21 of betulin | alkyl–alkyl | 4.55 | ||
J:Lys158 | C-5′ of BVM | alkyl–alkyl | 3.71 | ||
J:Lys158 | C-6′ of BVM | alkyl–alkyl | 4.76 | ||
I:Lys227 | 14a | carboxylate | salt bridge | 1.99 | |
G:Lys158 | carboxylate | carbon–hydrogen bond | 2.98 | ||
K:Lys158 | carboxylate | carbon–hydrogen bond | 5.18 | ||
J:Lys227 | phosphonate | conventional hydrogen bond | 2.23 | ||
L:Lys158 | phosphonate | conventional hydrogen bond | 1.97 | ||
J:Lys227 | ethyl | carbon–hydrogen bond | 2.40 | ||
L:Lys158 | phosphonate | carbon–hydrogen bond | 2.19 | ||
J:Gly222 | ethyl | carbon–hydrogen bond | 3.59 | ||
I:Lys158 | C-25 of betulin | alkyl–alkyl | 5.23 | ||
K:Lys158 | C-24 of betulin | alkyl–alkyl | 4.94 | ||
I:Lys158 | C-7 of betulin | alkyl–alkyl | 4.38 | ||
H:Lys158 | ethyl | alkyl–alkyl | 5.23 | ||
J:Pro224 | ethyl | alkyl–alkyl | 4.08 | ||
H:Lys158 | ethyl | alkyl–alkyl | 3.69 |