Table 6. Molecular analysis of A/TJ/1606/18 compared to other viruses.
Gene product | Function | Amino acid substitution | Virusa | ||||||
---|---|---|---|---|---|---|---|---|---|
TJ | FJ | HN | HB | JS | GD | CA | |||
HA | Altered receptor specificity | E190D | D | D | D | D | D | V | D |
D225E | E | E | E | E | E | E | D | ||
NA | Antiviral resistance (oseltamivir) | H275Y | H | H | H | H | H | H | H |
N295S | N | N | N | N | N | N | N | ||
PB2 | Enhanced polymerase activity | L89V | V | V | V | V | V | V | V |
Virus replication in mammals | Q591R | R | Q | R | Q | Q | R | R | |
E627K | E | E | E | E | E | E | E | ||
D701N | D | D | D | N | N | D | D | ||
PB1 | Between species transmission | X99H | H | H | H | H | H | H | H |
I368V | I | I | I | I | I | I | I | ||
PA | Increased polymerase activity in mice | L336M | M | M | M | L | L | L | M |
Species-associated signature positions | K356R | R | R | R | K | K | K | R | |
S409N | N | N | N | N | N | N | N | ||
M1 | Increased virulence in mice | T215A | A | A | A | A | A | A | A |
M2 | Antiviral resistance (amantadine) | S31N | N | N | N | N | N | N | N |
NS1 | Increased virulence in mice | P42S | S | S | S | S | S | S | S |
NP | Mammalian-adaptive and increased virulence in mice | Q357K | K | K | K | Q | Q | K | K |
aTJ, A/Tianjin-baodi/1606/2018(H1N1);FJ, A/Fujian-cangshan/SWL624/2016(H1N1); HN, A/Hunan/42443/2015(H1N1);HB, A/Hebei-yunhua/SWL1250/2012(H1N1);JS, A/Jiangsu/1/2011(H1N1); GD, A/swine/Guangdong/1/2010(H1N1);CA, A/California/07/2009(H1N1)pdm09. For each virus, amino acid positions carrying the substitution are highlighted.