Table 2.
Identified significant haplotypes associated with yellow resistance across five locations.
| Haplotype | Chromosome | SNPs | Location | P-value | R2 (%) |
|---|---|---|---|---|---|
| H2.5 | 1B | 1096067|F|0-12:G > A-12:G > A | Jalisco | 1.77E−06 | 8.752 |
| 1082843|F|0-43:T > C-43:T > C | |||||
| H4.1 | 2A | 1177572|F|0-15:T > G-15:T > G | Villagrán | 4.72E−14 | 19.898 |
| 1206128|F|0-54:G > A-54:G > A | Texcoco | 1.42E−15 | 17.884 | ||
| 5411524|F|0-14:G > A-14:G > A | Tlaxcala | 6.56E−21 | 19.948 | ||
| 1028859|F|0-50:G > C-50:G > C | Jalisco | 5.71E−08 | 12.839 | ||
| 1092886|F|0-39:A > C-39:A > C | Celaya | 1.95E−14 | 18.113 | ||
| H4.2 | 2A | 7940374|F|0-14:A > C-14:A > C | Villagrán | 4.73E−14 | 19.897 |
| 1262031|F|0-29:G > A-29:G > A | Texcoco | 3.38E−14 | 16.773 | ||
| 3951942|F|0-8:A > G-8:A > G | Tlaxcala | 1.58E−20 | 19.695 | ||
| 100280868|F|0-13:G > A-13:G > A | Jalisco | 1.42E−10 | 15.568 | ||
| Celaya | 1.57E−15 | 19.053 | |||
| H4.4 | 2A | 1277633|F|0-33:G > A-33:G > A | Villagrán | 2.95E−06 | 7.999 |
| 2258664|F|0-28:A > G-28:A > G | |||||
| H4.5 | 2A | 3064800|F|0-41:C > T-41:C > T | Tlaxcala | 2.11E−09 | 9.407 |
| H4.18 | 2A | 100278258|F|0-45:G > C-45:G > C | Villagrán | 1.53E−12 | 14.445 |
| 1287063|F|0-34:G > A-34:G > A | Texcoco | 2.30E−19 | 17.339 | ||
| Tlaxcala | 1.72E−25 | 19.69 | |||
| Jalisco | 5.63E−07 | 8.359 | |||
| Celaya | 2.14E−14 | 14.485 | |||
| H5.20 | 2B | 1209087|F|0-29:C > G-29:C > G | Jalisco | 6.84E−07 | 8.741 |
| 1101006|F|0-6:G > T-6:G > T | |||||