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. 2019 Oct 10;11(10):932. doi: 10.3390/v11100932

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© 2019 by the authors.

Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).

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Haplotype distribution in virus populations of all samples across the complete ORF. Stacked bar diagram showing the percentage distribution of haplotype A (C2661T (aa S763L), G3205A, C4612G, T4750C, T9940C, and A10669G), B (C2134T, T4150C, G5101A, and G11374C), and C (Koslov consensus), respectively. Haplotype distribution was calculated for each sample as the average of all SNPs constituting the haplotype A or B and summed. The remaining percentage, subtracted from 100%, was inferred to constitute haplotype C.