Antibodies |
β-actin (clone AC-74) |
Sigma-Aldrich |
Cat#: A5316; RRID: AB_476743 |
p-AMPK (clone 40H9) |
Cell Signaling Technology |
Cat#:2535; RRID: AB_331250 |
AMPK |
Cell Signaling Technology |
Cat#:2532; RRID: AB_330331 |
FASN |
Cell Signaling Technology |
Cat#:3189; RRID: AB_2100798 |
DAGLβ (D4P7C) |
Cell Signaling Technology |
Cat#:12574; RRID: AB_2797959 |
p-p42/44 MAPK |
Cell Signaling Technology |
Cat#:9101; RRID: AB_331646 |
ALDH4A1 (672) |
Santa Cruz Biotechnology |
Cat#:sc-100499; RRID: AB_2224476 |
CYP2E1 |
Millipore |
Cat#:AB1252; RRID: AB_90517 |
xCT |
Thermo Fisher Scientific |
Cat#:PA1–16893; RRID: AB_2286208 |
GCLC |
Thermo Fisher Scientific |
Cat#:PA5–16581; RRID: AB_10977936 |
NRF2 |
Abcam |
Cat#:ab31163; RRID: AB_881705 |
mGluR5 |
Abcam |
Cat#:ab76316; RRID: AB_1523944 |
GS |
Abcam |
Cat#: ab73593; RRID: AB_2247588 |
GLS2 |
Abcam |
Cat#; ab113509; RRID: AB_10866157 |
Anti-rabbit IgG, HRP-linked Antibody |
Cell Signaling Technology |
Cat#:7074; RRID: AB_2099233 |
Anti-mouse IgG, HRP-linked Antibody |
Thermo Fisher Scientific |
Cat#:31430; RRID: AB_228307 |
Anti-rabbit IgG H&L (Alexa Fluor® 488) |
Abcam |
Cat#:ab150061; RRID: AB_2571722 |
Anti-rabbit IgG H&L (Alexa Fluor® 594) |
Abcam |
Cat#:ab150064; RRID: AB_2734146 |
Anti-mouse IgG H&L (Alexa Fluor® 594) |
Abcam |
Cat#:ab150108; RRID: AB_2732073 |
CD16/CD32 (Clone 2.4G2) |
BD Biosciences |
Cat#:553141, RRID: AB_394656 |
CD45 (Clone 30-F11)-eFluor 450 |
Thermo Fisher Scientific |
Cat#: 48-0451-80; RRID: AB_1518807 |
F4/80 (Clone BM8)-FITC |
Thermo Fisher Scientific |
Cat#: 11-4801-82; RRID: AB_2637191 |
CD11b (Clone M1/70)-APC |
BD Biosciences |
Cat#: 553312; RRID: AB_398535 |
Anti-mGluR5 Antibody (Alexa Fluor® 647) |
Abcam |
Cat#:ab196929 |
Rabbit IgG - Isotype Control (Alexa Fluor® 647) |
Abcam |
Cat#:ab199093 |
Bacterial and Virus Strains |
DH5α Competent Cells |
Invitrogen/Fisher Scientific |
LS18265017 |
pAAV-U6-sgRNA(shRNA)-CMV-GFP |
Addgene |
Cat#:85451 |
Chemicals, Peptides, and Recombinant Proteins |
Acrylamide |
Bio-Rad |
Cat#161–0156 |
Blotting-Grade Blocker |
Bio-Rad |
Cat#: 170–6404 |
Bradford reagent |
Sigma-Aldrich |
Cat#:B6916 |
BSA |
Sigma-Aldrich |
Cat#:A9647 |
CHPG |
Tocris |
Cat#:1049 |
Collagenase type 1 |
Worthington |
Cat#:LS004197
|
CTEP (RO4956371) |
APExBIO |
Cat#:B1633 |
DAPI |
Abcam |
Cat#:ab104139 |
DHPG |
Tocris |
Cat#:0805 |
Dimethyl sulfoxide (DMSO) |
Sigma-Aldrich |
Cat#:D2650 |
High glucose Dulbecco’s modified Eagle’s medium (DMEM) |
Welgene |
Cat#:LM001–05 |
Histoacryl® |
B Braun |
NA |
Low glucose DMEM |
Welgene |
Cat#:LM001–11 |
Ethanol |
Millipore |
Cat#: 100983 |
Fetal Bovine Serum (FBS) |
Welgene |
Cat#:S101–01 |
KT172 |
Sigma-Aldrich |
Cat#:SML1688 |
L-glutamic acid, monosodium salt, low toxin |
Sigma-Aldrich |
Cat#:RES5063G-A701X |
MPEP hydrochloride |
Tocris |
Cat#:1212 |
Optiprep™ density gradient medium |
Sigma-Aldrich |
Cat#:D1556 |
Penicillin and streptomycin |
Thermo Fisher Scientific |
Cat#: 15240062 |
Percoll® |
Sigma-Aldrich |
Cat#:P1644 |
Protease and phosphatase inhibitor cocktail |
Thermo Fisher Scientific |
Cat#:78440 |
Rimonabant hydrochloride |
Tocris |
Cat#0923 |
Rosewell Park Memorial Institute (RPMI)-1640 |
Welgene |
Cat#:LM011–01 |
Sapl |
New England BioLabs |
Cat#:R0569S |
Sulfasalazine |
Sigma-Aldrich |
Cat#:S0883 |
Triton X-100 |
Sigma-Aldrich |
Cat#:T9284 |
Tween 20 |
Sigma-Aldrich |
Cat#:P1379 |
TRIzol reagent |
Thermo Fisher Scientific |
Cat#: 15596–018 |
Critical Commercial Assays |
ALDH4A1 ELISA Kit |
MyBioSource |
Cat#:MBS9332194 |
amfiRivert II cDNA Synthesis Master Mix |
GenDEPOT |
Cat#:R5500–100 |
DAB peroxidase substrate |
Vector Laboratories |
Cat#:SK-4100 |
ECL western blotting substrate |
Thermo Fisher Scientific |
Cat#:34095 |
ImmPRESS HRP Anti-Rabbit IgG Polymer Detection Kit |
Vector Laboratories |
Cat#:MP-7401 |
ReverTra Ace® qPCR RT Master Mix with gDNA Remover |
Toyobo |
Cat#:FSQ-301 |
SYBR Green Realtime PCR Master Mix |
Toyobo |
Cat#:QPK-201 |
Deposited Data |
RNA-seq analysis of pair- and ethanol-fed mouse liver tissue |
NCBI BioProject |
PRJNA494040 |
RNA-seq analysis of pair- and ethanol-fed mouse liver tissue |
NCBI Gene Expression Omnibus |
GEO: GSE97234
|
Gene microarray of alcoholic hepatitis patient liver tissue |
NCBI Gene Expression Omnibus |
GEO:GSE28619
|
Experimental Models: Cell Lines |
Human: HEK293T cells |
ATCC |
CRL-3216 |
Human: Hep3B cells |
ATCC |
HB-8064 |
Human: HepG2 cells |
ATCC |
HB-8065 |
Mouse: Neuro-2a cells |
ATCC |
CCL-131 |
Experimental Models: Organisms/Strains |
Cyp2e1 knock-out mice |
Jackson Laboratories |
#002910 (provided by Dr. Bin Gao) |
Grm5 knock-out mice |
Jackson Laboratories |
#003121 |
Slc7a11 tm1a mice |
EMMA mouse repository |
#EM:10001 |
Albumin-Cre mice |
Jackson Laboratories |
#003574 |
C57BL/6J |
Jackson Laboratories |
C57BL/6J |
Oligonucleotides |
primers for qPCR |
Bioneer |
See Table S3
|
control shRNA |
Bionner |
See STAR★METHODS
|
Slc7a11 shRNA |
Bioneer |
See STAR★METHODS
|
Software and Algorithms |
FlowJo, Version 10 |
FlowJo |
www.flowjo.com |
Ingenuity Pathway Analysis |
QIAGEN |
www.ingenuity.com |
GraphPad Prism version 7 |
Prism |
www.graphpad.com |
Other |
Lieber-DeCarli ethanol liquid diet |
Dyets |
Cat#:710260 |