TABLE 1.
Some metrics regarding the NGS transcriptome analyses
| Sample source |
No. of raw reads (paired) |
No. of cleaned reads (paired) |
No. of contigs |
No. of singletons |
Avg contig length (nt) |
No. of viral sequences |
No. of JMTV- like sequences |
|---|---|---|---|---|---|---|---|
| Ticks | |||||||
| Ixodes ricinus, Alsace, Francea | 150,756,775 | 148,229,568 | 163,565 | 3,926,877 | 165 | 15,227 | 4,619 |
| Rhipicephalus microplus, French Antilles | 41,696,475 | 41,581,009 | 28,565 | 1,188,734 | 168 | 700,252 | 258,023 |
| Amblyomma testudinarium, Lao PDR | 53,106,358 | 53,101,135 | 28,749 | 3,103,834 | 162 | 3,801 | 3,548 |
| Bats | |||||||
| Urine 1, Pteropus lylei, Cambodia | 69,925,441 | 69,760,609 | 112,609 | 5,703,210 | 144 | 607 | 0 |
| Urine 2, Pteropus lylei, Cambodia | 66,479,314 | 66,476,147 | 309,632 | 1,075,945 | 143 | 111,836 | 754 |
a
Two independent sequencing runs were performed for the Alsace sample; metrics correspond to the 2 runs.