Table 2.
Chromosome and physical location of single nucleotide polymorphisms significantly associated with total phenolic content (TPC) in pods of the Bean CAP snap bean diversity panel.
| QTN Designation 1 | Method | ss ID No. 2 | Chrom. 3 | Position (bp) | Prob. Value | -Log10 P | MAF 4 | SNP 5 |
|---|---|---|---|---|---|---|---|---|
| TPC1.1 | FarmCPU | 715648077 | 1 | 33,470,635 | 7.952E-09 | 8.10 | 0.05 | C-T |
| TPC1.2 | FarmCPU | 715646871 | 1 | 42,698,218 | 1.357E-10 | 9.87 | 0.07 | T-C |
| TPC3.1 | GAPIT | 715646623 | 3 | 40,370,083 | 2.448E-07 | 6.61 | 0.05 | T-C |
| TPC4.1 | FarmCPU | 715647815 | 4 | 2,190,413 | 2.912E-11 | 10.54 | 0.07 | G-A |
| TPC7.1 | FarmCPU | 715647649 | 7 | 28,427,257 | 6.783E-08 | 7.17 | 0.29 | T-C |
| TPC9.1 | GAPIT | 715647263 | 9 | 12,159,056 | 2.614E-06 | 5.58 | 0.09 | C-T |
| TPC9.2 | GAPIT | 715646560 | 9 | 12,776,010 | 2.872E-07 | 6.54 | 0.08 | A-G |
| TPC9.3 | FarmCPU | 715646559 | 9 | 13,053,019 | 7.182E-23 | 22.14 | 0.08 | G-A |
| TPC10.1 | FarmCPU | 715639693 | 10 | 11,130,696 | 5.660E-12 | 11.25 | 0.06 | T-C |
| TPC10.2 | FarmCPU | 715643755 | 10 | 23,719,802 | 2.746E-08 | 7.56 | 0.06 | C-T |
| TPC11.1 | FarmCPU | 715650328 | 11 | 52,968,750 | 3.222E-07 | 6.49 | 0.05 | T-C |
1 Quantitative trait nucleotide. 2 National Center for Biotechnology Information (NCBI) Assay SNP ID. 3 Chromosome. 4 Minor allele frequency. 5 Allelic substitution at single nucleotide polymorphism (SNP) locus.