Table 4.
Chromosome and physical location of single nucleotide polymorphisms significantly associated with flower color in the Bean CAP snap bean diversity panel.
| QTN Designation 1 | Method | ss ID No.2 | Chrom. 3 | Position (bp) | Prob. Value | -Log10 P | MAF 4 | SNP 5 |
|---|---|---|---|---|---|---|---|---|
| FC1.1 | FarmCPU | 715648402 | 1 | 8,955,838 | 3.088E-21 | 20.51 | 0.06 | A-C |
| FC1.2 | FarmCPU | 715645902 | 1 | 48,430,158 | 3.215E-10 | 9.49 | 0.09 | T-C |
| FC3.1 | FarmCPU | 715646620 | 3 | 40,621,263 | 1.087E-08 | 7.96 | 0.07 | T-C |
| FC3.1 | FarmCPU | 715646619 | 3 | 40,634,185 | 1.087E-08 | 7.96 | 0.07 | A-G |
| FC3.2 | FarmCPU | 715650182 | 3 | 40,901,620 | 1.087E-08 | 7.96 | 0.07 | T-C |
| FC3.2 | FarmCPU | 715650183 | 3 | 40,922,819 | 1.087E-08 | 7.96 | 0.07 | A-C |
| FC3.3 | FarmCPU | 715639426 | 3 | 41,081,362 | 1.087E-08 | 7.96 | 0.07 | C-T |
| FC3.3 | FarmCPU | 715639423 | 3 | 41,169,500 | 1.087E-08 | 7.96 | 0.07 | T-G |
| FC3.4 | FarmCPU | 715640920 | 3 | 43,174,196 | 1.087E-08 | 7.96 | 0.07 | A-C |
| FC9.1 | GAPIT | 715647263 | 9 | 12,159,056 | 2.326E-07 | 6.63 | 0.09 | C-T |
| FC9.2 | GAPIT | 715646560 | 9 | 12,776,010 | 7.518E-08 | 7.12 | 0.08 | A-G |
| FC9.3 | FarmCPU | 715646559 | 9 | 13,053,019 | 8.124E-21 | 20.09 | 0.08 | G-A |
| FC9.3 | GAPIT | 715648638 | 9 | 13,339,943 | 1.028E-06 | 5.99 | 0.19 | G-A |
1 Quantitative trait nucleotide. 2 National Center for Biotechnology Information (NCBI) Assay SNP ID. 3 Chromosome. 4 Minor allele frequency. 5 Allelic substitution at SNP locus.