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the number of cDNA DMRs found using different P-value cutoff thresholds. The All Window column shows all DMRs. The Multiple Window column shows the number of DMRs containing at least two significant windows. The number of DMR with each specific number of significant windows at a P-value threshold of 1e-05. (A) Lake 1 (Lytle Lake) versus Lake 2 (Capitol Lake). (B) Lake 1 (Lytle Lake) versus Lake 3 (Washington Lake). (C) Lake 2 (Capitol Lake) versus Lake 3 (Washington Lake)
