Table 4.
Expression of differentially expressed miRNAs and targeted mRNA genes analyzed
| ID miRNA | log2(TbCSV/TbCSB / Mock) | qRT-PCR | ID target gene | qRT-PCR | Functional annotation |
|---|---|---|---|---|---|
| miR156a | 1.27(up) | 4.47(up) | Niben101Scf19266g01002 | 0.82(down) | Squamosa promoter-binding protein |
| miR156d-5p | 1.05(up) | 7.97(up) | Niben101Scf10743g02013 | 0.51(down) | Squamosa promoter-binding-like protein |
| miR164a-5p | −1.05(down) | −0.36(down) | Niben101Scf02318g03012 | 1.76(up) | NAC domain-containing protein |
| Niben101Scf04745g02009 | 4.45(up) | NAC domain-containing protein | |||
| miR169c | 1.23(up) | 2.95(up) | Niben101Scf15723g00003 | 0.67(down) | YA2 |
| Niben101Scf10191g01007 | 0.36(down) | Nuclear transcription factor Y subunit A | |||
| miR171b | −1.15 (down) | −0.79(down) | Niben101Scf03072g03007 | 2.35(up) | GRAS family transcription factor |
| Niben101Scf03693g08008 | 1.72(up) | GRAS family transcription factor | |||
| miR1919c-5p | 1.10(up) | 1.34(up) | Niben101Scf02655g01001 | 0.76(down) | conserved hypothetical protein |
| miR4376 | 1.39(up) | 2.41(up) | Niben101Scf04808g00007 | 0.30(down) | calcium-transporting ATPase |
| miR482a | 1.24 (up) | 5.34(up) | Niben101Scf01683g07007 | 0.71(down) | Cyclin-dependent kinase |
| Niben101Scf01052g06002 | 0.56(down) | Disease resistance protein (NB-ARC) | |||
| Niben101Scf01941g01005 | 0.62(down) | Disease resistance protein (NB-ARC) | |||
| miR159 | 0.36(up) | 2.42(up) | Niben101Scf11569g00002 | 0.84(down) | MYB-like transcription factor |
| novel 121 | 1.53(up) | 2.55(up) | Niben101Scf00504g02001 | 0.68(down) | Heavy metal transport |
| Niben101Scf02139g05001 | 0.51(down) | Heavy metal transport | |||
| novel 70 | −1.91(down) | −0.12(down) | Niben101Scf02825g00022 | 1.96(up) | fiber protein Fb11 |
| Niben101Scf00578g04002 | 2.11(up) | Transcription factor | |||
| novel 71 | 1.61 (up) | 6.50(up) | Niben101Scf12157g00001 | 0.51(down) | N-acetyltransferase 10 homolog |
| Niben101Scf03820g00007 | 0.16(down) | N-acetyltransferase 10 homolog | |||
| novel 94 | −1.93(down) | −0.25(down) | Niben101Scf19336g00004 | 3.90(up) | 1-aminocyclopropane-1-carboxylate oxidase |
| Niben101Scf04528g12009 | 3.62(up) | GRAS family transcription factor |