Table 4.

Overlap of filtered CNVs with repeats, genes, and coding sequences (CDS) in tomato samples

Sample	Sequence	Repeats	Genes	CDS
	covered (Mb)	(% of total)	(% of total)	(% of total)
PI158760	0.21	64.9	12.38	2.32
LA2706	0.46	75.59	12.47	1.73
TR00003	1.59	84.01	9.38	1.89
LA4451	1.21	76.26	11.78	1.11
LA2157	8.59	82.79	11.01	1.25
LA0716	12.11	85.47	12.19	1.29
LYC4	12.13	81.53	13.41	1.04