Table 1. Selected proteins with increased abundance after compound treatment (from Supplemental Datasets S1 and S5–S13).
Significant fold change and P values are indicated in bold face.
| Protein | Protein Name | Peptides | Gene Symbol | Fold Change | P Value | Pathway | ||
|---|---|---|---|---|---|---|---|---|
| WD30030 | WD10784 | WD30030 | WD10784 | |||||
| Cre09.g396650.t1.2 | Phosphate acetyltransferase | 2 | PAT2 | 3.49 | 8.67 | 0.0172 | 0.0025 | Acetate utilization and formation |
| Cre06.g268750.t1.2 | NAD malic enzyme | 10 | NAD-ME2 | 3.74 | 4.31 | 0.0019 | 0.0013 | Tricarboxylic acid cycle |
| Cre10.g423250.t1.2 | Malate dehydrogenase | 12 | MDH2 | 2.53 | 2.25 | 0.0095 | 0.0151 | |
| Cre12.g514750.t1.2 | Citrate synthase | 14 | CIS1 | 1.54 | 2.16 | 0.0439 | 0.0068 | |
| Cre05.g241850.t1.2 | ATP citrate lyase, subunit A | 3 | ACLA1 | 8.67 | 3.42 | 0.0029 | 0.0211 | |
| Cre02.g088600.t1.2 | ATP citrate lyase, subunit B | 11 | ACLA2 | 2.29 | 2.34 | 0.0444 | 0.0414 | |
| Cre12.g526800.t1.2 | 6-Phosphogluconate dehydrogenase | 13 | 6PGD | 1.73 | 2.64 | 0.0455 | 0.0115 | Glycolysis/gluconeogenesis |
| Cre12.g485150.t1.2 | Glyceraldehyde 3-P dehydrogenase | 12 | GAP1a | 10.18 | 14.15 | 0.0018 | 0.0011 | |
| Cre12.g553250.t1.2 | Phosphofructokinase | 3 | PFK2 | 3.06 | 3.71 | 0.0285 | 0.0173 | |
| Cre17.g721500.t1.2 | Starch synthase, chloroplastic | 17 | STA2 | 1.23 | 2.41 | 0.2031 | 0.0029 | Starch and Suc metabolism |
| Cre07.g336950.t1.1 | Alpha-1,4 glucan phosphorylase | 19 | PHOA | 1.86 | 2.86 | 0.033 | 0.005 | |
| Cre12.g552200.t1.2 | Glycogen/starch/alpha-glucan phosphorylase | 6 | PHOB | 1.40 | 1.82 | 0.173 | 0.044 | |
| Cre06.g278210.t1.1 | Phosphoglucomutase | 22 | GPM1 | 2.41 | 2.61 | 0.0043 | 0.0032 | |
| Cre13.g566650.t2.1 | Putative long-chain acyl-CoA synthetase | 10 | LCS2 | 3.10 | 2.59 | 0.0036 | 0.0068 | FA and lipid metabolism |
| Cre16.g687350.t1.2 | Acyl-CoA oxidase | 4 | ACX3 | 2.51 | 4.18 | 0.0327 | 0.0076 | |
| Cre17.g723650.t1.2 | Acetyl-CoA Acyltransferase | 20 | ATO1 | 5.31 | 2.29 | 0.0072 | 0.0657 | |
| Cre01.g053000.t1.2 | Glycerol-3-P dehydrogenase | 12 | GDPH | 2.03 | 3.67 | 0.0520 | 0.0072 | |
| Cre01.g000300.t1.1 | 1-acylglycerol-3-P O-acyltransferase | 6 | GDP8 | 2.94 | 6.69 | 0.0177 | 0.0024 | |
| Cre09.g405500.t1.1 | Major LD protein | 3 | MLDP1 | 3.16 | 1.99 | 0.022 | 0.046 | |
| Cre09.g407700.t1.2 | Phospholipase A2 | 8 | CEP1 | 9.03 | 1.72 | 0.032 | 0.471 | |
| Cre16.g695050.t1.2 | Enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase | 15 | ECH1 | 1.79 | 0.99 | 0.039 | 0.957 | |
| NP_958385.1 | PSII reaction center protein H (PSII-H) | 4 | PsbH | 1.51 | 0.99 | 0.0018 | 0.8800 | Photosynthesis |
| Cre12.g508750.t1.2 | Chl a/b binding protein domain | 2 | Lhca2 | 4.14 | 1.04 | 0.02 | 0.93 | |
| Cre06.g284200.t1.2 | Chl a/b binding protein, chloroplastic | 7 | Lhcbm9 | 0.92 | 3.90 | 0.7670 | 0.0067 | |
| Cre13.g568800.t1.2 | NADH-ubiquinone oxidoreductase | 3 | NUOB12 | 2.59 | 5.10 | 0.1268 | 0.0294 | Respiration and oxidative phosphorylation |
| Cre16.g691552.t1.1 | Pyridine nucleotide-disulphide oxidoreductase | 2 | NDA1 | 1.28 | 7.32 | 0.7203 | 0.0371 | |
| Cre10.g458450.t1.1 | Glutathione peroxidase | 15 | GPXH | 2.05 | 3.00 | 0.0321 | 0.0080 | Redox homeostasis |
| Cre09.g391900.t1.1 | Thioredoxin h1 | 15 | TRXH | 5.53 | 4.39 | 0.0008 | 0.0013 | |
| Cre16.g688550.t1.2 | Glutathione-s-transferase | 18 | GSTS1 | 9.68 | 17.29 | 0.0004 | 0.0002 | |
| Cre03.g145787.t1.1 | HSP 22C | 8 | HSP22C | 1.38 | 10.38 | 0.3935 | 0.0021 | Heat shock proteins |
| Cre16.g677000.t1.2 | HSP 70E | 23 | HSP70E | 2.08 | 3.29 | 0.0034 | 0.0006 | |
| Cre06.g250100.t1.2 | HSP 70B | 38 | HSP70B | 1.54 | 2.25 | 0.0107 | 0.0011 | |
| Cre01.g029650.t1.1 | Subunit of retromer complex | 5 | VPS35 | 3.60 | 4.66 | 0.0018 | 0.0009 | Endocytosis |
| Cre17.g728150.t1.2 | R-SNARE protein, YKT6-family | 3 | YKT6 | 13.87 | 12.18 | 0.0046 | 0.0055 | SNARE interactions in vesicular transport |
| Cre06.g269950.t1.2 | Flagellar-associated protein | 22 | CDC48 | 2.16 | 3.16 | 0.0342 | 0.0092 | Protein processing in ER |
| Cre06.g278163.t1.1 | Acetyl-Orn aminotransferase | 2 | ARG9 | 1.45 | 7.69 | 0.3754 | 0.0054 | Biosynthesis of amino acids |
| Cre06.g252650.t1.2 | Isopropylmalate dehydratase, small subunit | 2 | LEU1S | 2.23 | 3.42 | 0.0245 | 0.0056 | |