Table 3. Comparisons of the abundance of selected proteins for compound-treated cells versus nitrogen starvation based on this work (Supplemental Dataset S14) and Wase et al. (2014).
Significant fold change and P values are indicated in bold face. NS, not significant.
| Protein | Name | Gene Symbol | Fold Change | P Values | ||||
|---|---|---|---|---|---|---|---|---|
| WD30030 | WD10784 | Nitrogen, 48 h | WD30030 | WD10784 | Nitrogen, 48 h | |||
| Carbon metabolism | ||||||||
| Cre06.g264200.t1.2 | Succinate dehydrogenase 2-2 | SDH2 | 0.93 | 0.38 | 1.36 | 0.822 | 0.034 | 0.043 |
| Cre02.g080200.t1.2 | Transketolase | TRK1 | 0.58 | 0.25 | 0.61 | 0.049 | 0.002 | 0.000 |
| Cre12.g510650.t1.2 | Fru-1,6-bisphosphatase I | FBP1 | 1.90 | 1.58 | 0.59 | 0.036 | 0.091 | 0.067 |
| Cre12.g511900.t1.2 | d-Ribulose-5-P-3-epimerase | RPE1 | 0.24 | 0.19 | 0.97 | 0.003 | 0.001 | 0.890 |
| Cre12.g554800.t1.2 | Phosphoribulokinase | PRK1 | 1.21 | 0.54 | 0.63 | 0.491 | 0.072 | 0.031 |
| Cre12.g526800.t1.2 | 6-Phosphogluconate dehydrogenase family protein | 6PGD | 1.73 | 2.64 | 1.63 | 0.045 | 0.011 | 0.014 |
| Cre03.g149100.t1.2 | Citrate synthase 2 | CIS2 | 1.32 | 1.06 | 0.46 | 0.088 | 0.674 | 0.000 |
| Cre12.g514750.t1.2 | Citrate synthase family protein 1 | CIS1 | 1.54 | 2.16 | 1.56 | 0.044 | 0.007 | 0.006 |
| Cre06.g272050.t1.2 | Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent | PGM1a| PGM1b | 1.19 | 1.55 | 1.62 | 0.621 | 0.246 | 0.001 |
| Cre12.g485150.t1.2 | Glyceraldehyde-3-P dehydrogenase of plastid 1 | GAP1a| GAP1b | 10.18 | 14.15 | 4.03 | 0.002 | 0.001 | 0.000 |
| Cre12.g513200.t1.2 | Enolase | PGH1 | 1.16 | 0.99 | 1.50 | 0.624 | 0.977 | 0.000 |
| Fatty acid and lipid metabolism | ||||||||
| Cre13.g577100.t1.2 | Acyl carrier protein | ACP2 | 0.69 | 0.63 | 1.23 | 0.165 | 0.102 | 0.323 |
| Cre08.g359350.t1.2 | Acetyl coenzyme, a carboxylase biotin carboxylase subunit | BCR1 | 0.27 | 0.13 | 0.93 | 0.006 | 0.001 | 0.732 |
| Cre12.g519100.t1.2 | Acetyl coenzyme, a carboxylase carboxyltransferase alpha-subunit | ACX1 | 0.54 | 0.20 | 1.01 | 0.368 | 0.046 | 0.937 |
| Cre01.g035350.t1.2 | Polyketide synthase, enoylreductase family protein | Not assigned | 3.46 | 5.70 | 1.18 | 0.010 | 0.003 | 0.495 |
| Cre11.g476550.t1.2 | Polyketide synthase, enoylreductase family protein | Not assigned | 2.69 | 2.41 | 1.23 | 0.001 | 0.002 | NS |
| Cre01.g053000.t1.2 | NAD-dependent glycerol-3-P dehydrogenase family protein | Not assigned | 2.03 | 3.67 | 2.92 | 0.052 | 0.007 | 0.028 |
| Starch metabolism | ||||||||
| Cre13.g567950.t1.2 | Glc-1-P adenylyltransferase | STA1 | 0.65 | 0.44 | 0.67 | 0.104 | 0.016 | 0.294 |
| Cre03.g188250.t1.2 | Glc-1-P adenylyltransferase | STA6 | 0.72 | 0.36 | 0.55 | 0.287 | 0.020 | 0.117 |
| Cre03.g181500.t1.2 | Disproportionating enzyme | STA11 | 2.41 | 2.23 | 1.74 | 0.021 | 0.028 | 0.535 |
| Cre07.g336950.t1.1 | Alpha-glucan phosphorylase 2 | PHOA | 1.86 | 2.86 | 2.74 | 0.033 | 0.005 | 0.000 |
| Cre12.g552200.t1.2 | Alpha-glucan phosphorylase 2 | PHOB | 1.40 | 1.82 | 1.14 | 0.173 | 0.044 | 0.131 |
| Photosynthesis | ||||||||
| Cre12.g550850.t1.2 | PSII subunit P-1 | PSBP1 | 0.90 | 0.74 | 0.21 | 0.670 | 0.225 | 0.001 |
| Cre16.g673650.t1.1 | LHC of PSII 5 | IHCB5 | 0.98 | 0.77 | 0.19 | 0.907 | 0.179 | 0.000 |
| Cre17.g720250.t1.2 | LHC PSII | LHCB4 | 0.88 | 0.76 | 0.21 | 0.551 | 0.255 | 0.000 |
| Amino acid biosynthesis | ||||||||
| Cre06.g252650.t1.2 | Aconitase/3-isopropylmalate dehydratase protein | LEU1S | 2.23 | 3.42 | 0.96 | 0.024 | 0.006 | NS |