Table 6.

Gene Ontology terms significantly enriched in the refined gene set.

ID	Description	4-star	LA	LB	HER2-E	BL
GO: Biological Process
GO:0051173	Regulation of cell cycle	✓			✓	✓
GO:0010604	Regulation of cell population proliferation	✓		✓	✓	✓
GO:0000122	Negative regulation of transcription by RNA polymerase II	✓	✓	✓	✓
GO:0010332	Response to gamma radiation	✓
GO:0045892	Negative regulation of transcription, DNA-templated	✓			✓	✓
GO:0006974	Cellular response to DNA damage stimulus	✓	✓	✓		✓
GO:1902043	Positive regulation of extrinsic apoptotic signaling pathway via death domain receptors				✓
GO: Molecular Function
GO:0003682	Chromatin binding	✓		✓	✓	✓
GO:0005515	Protein binding	✓		✓	✓	✓
GO:0003677	DNA binding	✓	✓		✓
GO:0019901	Protein kinase binding	✓	✓			✓
GO:0019900	Kinase binding	✓
GO:0008139	Nuclear localization sequence binding	✓
GO:0043565	Sequence-specific DNA binding	✓		✓	✓
GO: Cellular Component
GO:0044454	Nuclear chromosome part	✓				✓
GO:0005634	Nucleus	✓		✓	✓	✓
GO:0000785	Chromatin	✓			✓
GO:0000792	Heterochromatin	✓			✓
GO:0005737	Cytoplasm	✓			✓	✓
GO:0000803	Sex chromosome	✓
GO:0005829	Cytosol	✓			✓	✓