Table 1. Analysis of possible recombination events in S5 sequences, detected using various algorithms.
| Recombinant Sequence | Major parent | Minor parent | Detection methods | Beginning breakpoint |
Ending breakpoint | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| R | G | B | M | C | S | T | |||||
| 14BM20 | 14BM18 | 14BM22 | 5.131×10−3 | 5.437×10−3 | 2.120×10−6 | 1.445×10−8 | 2.153×10−5 | 3.3821×10−19 | 1.874×10−27 | 3087 | 2064 |
| 14NM43 | 14ⅢM-2 | 14NM14 | 3.360×10−20 | 2.474×10−19 | 1.348×10−15 | 8.928×10−15 | 3.048×10−15 | 7.729×10−18 | 4.179×10−35 | 1184 | 2064 |
| 14ⅢM-1 | 14ⅢM-2 | 14BM18 | 4.334×10−9 | 1.196×10−9 | - | 1.489×10−12 | 9.169×10−13 | 5.624×10−16 | 1.084×10−19 | 1201 | 2032 |
| 14NM23 | 14BM7 | 14VⅢM-1 | 4.719×10−15 | 1.277×10−13 | - | 7.717×10−11 | 6.531×10−11 | 8.168×10−11 | 1.313×10−21 | 2075 | 3088 |
| 14NM17 | 14NM25 | 14NM9 | 4.429×10−13 | 1.342×10−13 | 4.634×10−13 | 7.217×10−13 | 2.467×10−13 | 3.346×10−12 | 7.782×10−24 | 3089 | 1293 |
| 14BM2 | 14BM18 | 13VR-5 | 7.013×10−4 | 4.212×10−2 | 3.373×10−3 | 6.521×10−7 | - | 5.293×10−11 | 6.413×10−7 | 191 | 2010 |
| 14NM25 | 14NM28 | 14NM26 | 1.404×10−4 | 5.479×10−4 | 6.209×10−3 | 5.452×10−6 | 5.111×10−6 | 8.996×10−7 | 6.096×10−9 | 1207 | 2076 |
| 14VⅢR-1 | 14NM28 | 14NM21 | 9.560×10−4 | 1.440×10−2 | - | 3.329×10−2 | 2.964×10−2 | 1.257×10−3 | 1.468×10−5 | 1265 | 1883 |
The abbreviations R, G, B, M, C, S and T represent the algorithms in RDP software including RDP, Geneconv, Bootscan, Maxchi, Chimaera, Siscan and 3seq, respectively.