Table 1. Known cell-type specific markers identified respectively by SCMarker and the highest variable gene approach.
| Known markers | Cell type | Cluster ID (SCMarker) |
Cluster ID (highest variable) |
Cluster ID (highest expressed) |
|---|---|---|---|---|
| CD3D | T cell | 1 | 1 | 1 |
| S100A2 | Myeloid | 8, 9 | ||
| IGHG1 | B cell | 23 | ||
| MS4A2 | Mast | 2 | ||
| LYZ | Myeloid | 2, 15, 17, 19 | 3, 4 | |
| CLDN5 | Endothelial | 3 | 3 | |
| COL1A1 | Fibroblast | 5 | ||
| CD27 | T cell | 6 | ||
| CAPS | Epithelial | 14 | ||
| CAV1 | Alveolar | 11 | 3 | |
| GZMH | T cell | 1 | ||
| GZMA | T cell | 1 | 11 | |
| IFITM3 | Myeloid | 3 | ||
| COL6A2 | Fibroblast | 5 | ||
| MS4A | B cell | 6 | ||
| CD79A | B cell | 6 | ||
| SFTPC | Alveolar | 10 |
Only the top 10 highest expressed markers per cluster are included in the comparison.