Table 1.
Oligonucleotides used in this study.
| Name | Reference | RNA | Sequence (5′-NNN-3′) | Strand orientation |
|---|---|---|---|---|
| CPV1 | 1 | CGCAAGTACGCCTTGATAAAGAAC | forw. nt 2391 | |
| CPV2 | 1 | ACTACTAGAAACTCGTCGCTTCG | rev. nt 2469 | |
| CPV3 | 1 | FAM-TCAAGAACGAGACCACCGCCAAGTTC-TAMRA | forw. nt 2419 | |
| CPV4 | 1 | GGCCACGCGTCGACTAGTACCTAAATGTGGTGAAGTGCG | rev. nt 3588 | |
| CPV5 | 1 | GTTGGTAACTTGGACGATC | rev. nt 370 | |
| CPV6 | 1 | ATTGCGGCTGCGATCGGATG | rev. nt 176 | |
| CPV7 | 1 | GGCCACGCGTCGACTAGTACGGGCTACCTTACCAGTGC | rev. nt 3662 | |
| CPV8 | 1 | ATTTAGGTGACACTATAGGTAAACTTTAGGACTAAGATGAATC | forw. nt 1 | |
| CPV9 | 1 | TAGCAGCGGCCGCAACGGGGCTACCTTACCAGTGCCTT | rev. nt 3679 | |
| CPV10 | 1 | ATCGGTGCTCTGACATATGC | forw. nt 3228 | |
| CPV11 | 1 | ACCACATTTAGAGCCAC | forw. nt 3580 | |
| CPV12 | 1 | CTCGTAGACTGCGTACACGAC | 3′-RACE | |
| CPV13 | 1 | PHO-GTCGTGTACGCAGTCTACGAGGTACTAGTCGACGCGTGGCC-AmC3 | 3′-RACE | |
| CPV14 | 1 | GGCCACGCGTCGACTAGTACTTTTTTTTTTTTTTTTT | 5′-RACE | |
| CPV15 | 1 | GGCCACGCGTCGACTAGTAC | 5′-RACE | |
| CPV16 | 1 | ACGGCACTGAATATCAGC | forw. nt 906 | |
| CPV17 | 1 | ATCGAAACCAGAGTGAT | forw. nt 1710 | |
| CPV18 | 1 | ATCGGTGCTCTGACATATGC | forw. nt 3228 | |
| CPV19 | 1 | GAGACCACCGCCAAGTTCGTG | forw. nt 2427 | |
| CPV20 | 2 | GGCCACGCGTCGACTAGTACAACCATGATAGGGCGTATGACGAC | rev. nt 2282 | |
| CPV21 | 2 | AGCGTGAACGGGCCATCGCAC | rev. nt 299 | |
| CPV22 | 2 | ACCTGAGATAACGTAGGCC | rev. nt 163 | |
| CPV23 | 2 | GGCCACGCGTCGACTAGTACGGGAACCATGATAGGGCGTA | rev. nt 2308 | |
| CPV24 | 2 | TAGCAGCGGCCGCAACGGGGAACCATGATAGGGCGTATG | rev. nt 2308 | |
| CPV25 | 2 | ATTTAGGTGACACTATAGGTAAACCTTAGGCTTTCATC | forw. nt 1 | |
| CPV26 | 2 | CATTCTCCTCAGCGTCTTTGCTCTCGGCGTTTATG | forw. nt 768 | |
| CPV27 | 2 | TCCTCGATGGTTCGGAGTTGGAG | rev. nt 742 | |
| CPV28 | 2 | ATTCCTGGCTCAAGAAAGC | forw. nt 1807 | |
| CPV29 | 2 | CAATAACGCGGTCAACACCAC | forw. nt 2090 | |
| CPV30 | 2 | ACTCTCAATGAGAAGTACCGTGTC | forw. nt 1911 | |
| CPV31 | 2 | GATCTTGATGTCAGCTGATACCAAG | rev. nt 1625 | |
| CPV32 | 2 | TCTAACATCCACCGAGACGTTAAC | forw. nt 1650 | |
| CPV33 | 2 | ACATACCATTATAAGCACCAATC | forw. nt 1319 | |
| CPV34 | 2 | ATCAAGGTGTCAACGACTGAC | rev. nt 1844 | |
| CPV35 | 2 | GATCTTGATGTCAGCTGATACCAAG | rev. nt 1625 | |
| CPV36 | 2 | TCTAACATCCACCGAGACGTTAAC | forw. nt 1650 | |
| fDWV qRT | Berényi et al., 2007 | ATTGTGCCAGATTGGACTAC | forw. | |
| rDWV qRT | Berényi et al., 2007 | AGATGCAATGGANGATACAG | rev. | |
| fSBV RT | Grabensteiner et al., 2001 | ACCAACCGATTCCTCAGTAG | forw. | |
| rSBV RT | Grabensteiner et al., 2001 | CGTGTAATTATTGTATTNTCCTC | rev. | |
| fABPV RT | Bakonyi et al. 2002 | GTGCTATCTTGGAATACTAC | forw. | |
| rABPV RT | Bakonyi et al. 2002 | AAGGTTTAGGTTCTACTACT | rev. |