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. 2019 Nov 8;51:62. doi: 10.1186/s12711-019-0506-2

Table 1.

Top 10 variants for each significant quantitative trait locus detected in the genome-wide association analysis for proportion of white spotting

Variant reference ID Genomic position Effect size (%)a Standard error p-value
Chromosome 22
1 rs209784468 Chr22 g.31769747A>G 11.52 0.129 1.83 × 10−79
2 rs461193589 Chr22 g.31783093T>C 11.35 0.129 8.67 × 10−79
3 rs456585934 Chr22 g.31888569A>G 11.43 0.13 1.21 × 10−78
4 rs209274730 Chr22 g.32386542A>C 11.06 0.129 1.38 × 10−77
5 rs480312583 Chr22 g.31958551G>A 11.2 0.13 2.47 × 10−77
6 NA Chr22 g.31768931A>T 10.88 0.129 6.11 × 10−77
7 rs208958980 Chr22 g.31769772T>C 10.84 0.129 1.59 × 10−76
8 rs433645096 Chr22 g.31768933A>T 10.84 0.129 1.59 × 10−76
9 NA Chr22 g.31768928TG>T 10.82 0.129 2.29 × 10−76
10 rs209837244 Chr22 g.32369667G>A 10.94 0.129 2.57 × 10−76
Chromosome 6
1 rs451683615 Chr6 g.64210286A>G 12.86 0.15 1.10 × 10−64
2 rs463810013 Chr6 g.71722665C>T 12.27 0.152 6.37 × 10−61
3 rs109512689 Chr6 g.71873479T>C 12.02 0.151 8.08 × 10−61
4 rs385773341 Chr6 g.71873455A>C 12.02 0.151 8.08 × 10−61
5 rs474403670 Chr6 g.71698814A>G 12.22 0.152 8.99 × 10−61
6 rs208251862 Chr6 g.71692344C>A 10.62 0.146 7.05 × 10−59
7 rs43469863 Chr6 g.79629052T>C 7.76 0.139 7.47 × 10−49
8 rs43469866 Chr6 g.79631054T>C 7.69 0.139 1.34 × 10−48
9 rs43764915 Chr6 g.79649488A>G 7.54 0.139 9.51 × 10−48
10 rs208257925 Chr6 g.79640038G>A 7.48 0.139 1.90 × 10−47
Chromosome 2
1 rs109979909 Chr2 g.111576221A>C 3.19 0.157 1.27 × 10−13
2 NA Chr2 g.111588505GA>G 3.19 0.157 1.40 × 10−13
3 rs379031581 Chr2 g.111587292A>G 3.19 0.157 1.40 × 10−13
4 rs385337886 Chr2 g.111573853A>G 3.19 0.157 1.40 × 10−13
5 rs468881264 Chr2 g.111615661G>A 3.19 0.157 1.40 × 10−13
6 NA Chr2 g.111601410A>G 3.18 0.156 1.41 × 10−13
7 rs381689348 Chr2 g.111604662A>C 3.18 0.156 1.41 × 10−13
8 rs377769439 Chr2 g.111634835G>A 3.18 0.157 1.55 × 10−13
9 rs385963805 Chr2 g.111570788G>A 3.18 0.157 1.55 × 10−13
10 rs380782402 Chr2 g.111560710G>A 3.17 0.156 1.58 × 10−13

aEffect size is expressed as the percentage of white on the coat attributed to each additional ‘Q’ allele