Table 1.
Gene Ontology categories significantly enriched in DEGs at 2 dpi in the infection caused by Fusarium in vanilla
| DEGs | GO term | Ontology | Description | p-value | FDR |
|---|---|---|---|---|---|
| Up-Regulated | GO:0006412 | P | translation | 2.90E-41 | 2.10E-38 |
| GO:0034645 | P | cellular macromolecule biosynthetic process | 6.50E-29 | 1.90E-26 | |
| GO:0009058 | P | biosynthetic process | 7.90E-29 | 1.90E-26 | |
| GO:0009059 | P | macromolecule biosynthetic process | 1.00E-28 | 1.90E-26 | |
| GO:0044249 | P | cellular biosynthetic process | 2.80E-28 | 4.00E-26 | |
| GO:0019538 | P | protein metabolic process | 1.10E-26 | 1.30E-24 | |
| GO:0010467 | P | gene expression | 1.80E-24 | 1.90E-22 | |
| GO:0044267 | P | cellular protein metabolic process | 2.70E-24 | 2.40E-22 | |
| GO:0044238 | P | primary metabolic process | 4.00E-24 | 3.20E-22 | |
| GO:0043170 | P | macromolecule metabolic process | 6.60E-21 | 4.70E-19 | |
| GO:0008152 | P | metabolic process | 1.40E-20 | 9.10E-19 | |
| GO:0044260 | P | cellular macromolecule metabolic process | 4.40E-19 | 2.60E-17 | |
| GO:0044237 | P | cellular metabolic process | 3.40E-17 | 1.90E-15 | |
| GO:0009987 | P | cellular process | 1.60E-16 | 8.30E-15 | |
| GO:0042254 | P | ribosome biogenesis | 2.70E-16 | 1.30E-14 | |
| GO:0022613 | P | ribonucleoprotein complex biogenesis | 6.60E-16 | 3.00E-14 | |
| GO:0044085 | P | cellular component biogenesis | 4.40E-11 | 1.80E-09 | |
| GO:0009791 | P | post-embryonic development | 3.90E-06 | 0.00016 | |
| GO:0003735 | F | structural constituent of ribosome | 4.20E-57 | 1.40E-54 | |
| GO:0005198 | F | structural molecule activity | 5.20E-50 | 8.30E-48 | |
| GO:0008135 | F | translation factor activity, nucleic acid binding | 1.20E-07 | 1.30E-05 | |
| GO:0003746 | F | translation elongation factor activity | 6.10E-07 | 4.90E-05 | |
| GO:0022626 | C | cytosolic ribosome | 4.60E-65 | 1.00E-62 | |
| GO:0044445 | C | cytosolic part | 1.00E-57 | 1.10E-55 | |
| GO:0033279 | C | ribosomal subunit | 5.50E-56 | 4.10E-54 | |
| GO:0005840 | C | ribosome | 1.20E-55 | 6.50E-54 | |
| GO:0030529 | C | ribonucleoprotein complex | 2.00E-48 | 8.80E-47 | |
| GO:0043232 | C | intracellular non-membrane-bounded organelle | 3.70E-45 | 1.20E-43 | |
| GO:0043228 | C | non-membrane-bounded organelle | 3.70E-45 | 1.20E-43 | |
| GO:0005829 | C | cytosol | 3.90E-43 | 1.10E-41 | |
| GO:0022625 | C | cytosolic large ribosomal subunit | 3.20E-40 | 7.70E-39 | |
| GO:0015934 | C | large ribosomal subunit | 1.10E-35 | 2.40E-34 | |
| GO:0044422 | C | organelle part | 3.30E-30 | 6.00E-29 | |
| GO:0044446 | C | intracellular organelle part | 3.20E-30 | 6.00E-29 | |
| GO:0032991 | C | macromolecular complex | 7.00E-27 | 1.20E-25 | |
| GO:0022627 | C | cytosolic small ribosomal subunit | 1.20E-22 | 1.80E-21 | |
| GO:0015935 | C | small ribosomal subunit | 1.10E-20 | 1.60E-19 | |
| GO:0044444 | C | cytoplasmic part | 2.30E-19 | 3.20E-18 | |
| GO:0005737 | C | cytoplasm | 2.80E-18 | 3.70E-17 | |
| GO:0005730 | C | nucleolus | 2.70E-16 | 3.20E-15 | |
| GO:0043229 | C | intracellular organelle | 4.40E-14 | 4.90E-13 | |
| GO:0005622 | C | intracellular | 4.40E-14 | 4.90E-13 | |
| GO:0043226 | C | organelle | 4.70E-14 | 4.90E-13 | |
| GO:0031981 | C | nuclear lumen | 1.00E-13 | 1.00E-12 | |
| GO:0044424 | C | intracellular part | 2.70E-13 | 2.60E-12 | |
| GO:0043233 | C | organelle lumen | 2.20E-12 | 1.90E-11 | |
| GO:0070013 | C | intracellular organelle lumen | 2.20E-12 | 1.90E-11 | |
| GO:0044428 | C | nuclear part | 2.50E-12 | 2.10E-11 | |
| GO:0031974 | C | membrane-enclosed lumen | 2.80E-12 | 2.30E-11 | |
| GO:0044464 | C | cell part | 1.80E-08 | 1.30E-07 | |
| GO:0005623 | C | cell | 1.80E-08 | 1.30E-07 | |
| GO:0016020 | C | membrane | 7.70E-07 | 5.60E-06 | |
| Down-Regulated | GO:0042545 | P | cell wall modification | 2.20E-06 | 0.00088 |
| GO:0009664 | P | plant-type cell wall organization | 1.40E-06 | 0.00088 | |
| GO:0044262 | P | cellular carbohydrate metabolic process | 4.70E-06 | 0.001 | |
| GO:0005975 | P | carbohydrate metabolic process | 5.00E-06 | 0.001 | |
| GO:0005976 | P | polysaccharide metabolic process | 9.60E-06 | 0.0016 | |
| GO:0006260 | P | DNA replication | 1.60E-05 | 0.0021 | |
| GO:0009827 | P | plant-type cell wall modification | 2.70E-05 | 0.0032 | |
| GO:0060918 | P | auxin transport | 5.70E-05 | 0.0055 | |
| GO:0009914 | P | hormone transport | 6.20E-05 | 0.0055 | |
| GO:0003824 | F | catalytic activity | 1.30E-06 | 0.00031 | |
| GO:0016757 | F | transferase activity, transferring glycosyl groups | 7.00E-05 | 0.0075 | |
| GO:0016758 | F | transferase activity, transferring hexosyl groups | 9.50E-05 | 0.0075 | |
| GO:0030312 | C | external encapsulating structure | 6.70E-07 | 4.70E-05 | |
| GO:0005618 | C | cell wall | 5.90E-07 | 4.70E-05 | |
| GO:0031225 | C | anchored to membrane | 9.00E-05 | 0.0042 |
In the table the Gene Ontology (GO) terms that are significantly (q ≤ 0.05) overrepresented using AgriGO V2 are observed. P corresponds to Biological Process, C corresponds to Cellular Component, and F corresponds to Molecular Function