Table 3. Comparison of the number of van der Waals contacts and hydrogen bonds (the distance cutoff between non-H atoms is ≤3.2 Å) between the ligand (cocaine or benzoylecgonine) and the Fab in various complex structures.
Fab complex | No. of contacts (≤4.0 Å) | No. of hydrogen bonds | No. of water molecules mediating hydrogen bonds |
---|---|---|---|
h2E2 (benzoylecgonine; this study) | 66 | 0 | 1 |
PDB entry 1qyg (benzoylecgonine; Pozharski et al., 2005 ▸) | 103 | 2 | 2 |
PDB entry 1q72 (cocaine; Pozharski et al., 2005 ▸) | 93 | 0 | 1 |
PDB entry 1i7z (cocaine; Larsen et al., 2001 ▸) | 68 | 0 | 1 |