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. Author manuscript; available in PMC: 2020 Oct 21.
Published in final edited form as: Inorg Chem. 2019 Sep 30;58(20):13933–13944. doi: 10.1021/acs.inorgchem.9b01840

Table 3.

OLYP-D3-BJ Calculated Geometrical, Energetic, and net Spin Properties of the Optimized DNC Geometries in the Following Sates: A, Peroxo, Hydroperoxo, PM, PR, F, FH, and OH.

State Structure a Geometry (Å)
ΔG c Q d Net Spin e
Fe-N(H384) Fe-O1 O1-O2 (O1⋯O2) Cu-O b Fe⋯Cu Fea3 O1 O2 CuB Y237
A Fea33+,LS-O2−•⋯-CuB+,Y-OH 2.15 1.82 1.30 2.95 4.55 0.0 1 0.96 −0.30 −0.51 −0.06 0.0
Peroxo Fea33+,LS-O22−-CuB2+,Y-OH 2.12 1.80 1.37 1.94 3.88 −26.5 1 0.74 −0.02 −0.21 −0.34 0.0
Hydroperoxo Fea33+,LS-OOH-CuB2+,Y-O 2.07 1.78 1.50 2.11 4.31 −13.1 1 0.88 0.13 −0.06 −0.34 −0.39
PM Fea34+,IS=O2−⋯HO-CuB2+,Y-O 2.10 1.65 2.68 1.90 4.28 −29.3 1 1.29 0.75 −0.21 −0.50 −0.90
PR Fea34+,IS=O2−⋯HO-CuB2+,Y-O 2.09 1.65 2.67 1.91 4.42 −25.4 0 1.28 0.77 −0.21 −0.50 0.0
F Fea34+,IS=O2−⋯H2O-CuB2+,Y-O 2.10 1.66 2.52 2.26 4.58 −40.2 1 1.37 0.69 −0.01 −0.36 −0.41
FH Fea34+,IS=O2−⋯CuB2+,Y-O 2.15 1.68 2.40 3.81 −46.2 1 1.37 0.67 −0.22 −0.59
OH Fea33+,HS-OH-CuB2+,Y-O 2.43 1.98 1.99 3.58 −56.2 1 4.02 0.13 −0.37 −0.25
a.

LS stands for low-spin, IS is for intermediate-spin, and HS is for high-spin. In state A, the LS Fea33+ site is AF-coupled to the O2−• radical, and in other states given here, the Fea3 site AF-couples to the CuB site.

b.

In states A, FH, and OH, this is the distance between CuB and O1 (see Figure 4). In other states, this is the CuB-O2 distance.

c.

Calculated relative free energies at pH = 7 (kcal mol−1), including the spin-projection corrections to the broken-symmetry state energies, the zero-point energy differences, and with the reference to a typical cytochrome c redox potential of E0 = +0.22 eV (see details in Supporting Information).

d.

The net charge of the model cluster.

e.

The Mulliken net spin populations (number of unpaired electrons) on Fea3, O1, O2, and CuB, and on the heavy atoms of the Tyr237 (Y) side chain (the sum total).