Table 2.
Reference datasets
| GSE | Description | Species | Tissue | Nsamples | PMID |
|---|---|---|---|---|---|
| GSE23006 | Wound healing | Mouse | Skin | 24 | 20704739 |
| GSE23006 | Wound healing | Mouse | Tongue | 24 | 20704739 |
| GSE28914 | Wound healing | Human | Skin | 25 | 23082929 |
| GSE17698 | Wound healing | Rat | Eardrum | 40 | 21919009 |
| GSE35255 | Wound healing | Axolotl, aquatic | Skin | 16 | 22485136 |
| GSE35255 | Wound healing | Axolotl, terrestrial | Skin | 16 | 22485136 |
| GSE9293 | Colitis by TNBS | Rat | Colon | 18 | – |
| GSE9281 | Colitis by DSS | Rat | Colon | 42 | – |
| GSE35609 | Colitis by TNBS | Mouse | Colon | 34 | 23226271 |
| GSE19392 | IFN-β stimulation | Human | Airway epithelial cells | 169 | 20064372 |
| GSE19182 | Cytokine stimulation | Human | HNEC cells | 21 | 22005912 |
| GSE27870 | TNF-α a stimulation | Human | Endothelial cells | 24 | 22121215 |
| GSE32513 | Microbial colonization | Mouse | Jejunum | 48 | 22617837 |
| GSE32513 | Microbial colonization | Mouse | Ileum | 48 | 22617837 |
| GSE32513 | Microbial colonization | Mouse | Colon | 48 | 22617837 |
| GSE51269 | TLR knock-out | Mouse | Colon | 20 | 25210121 |
| GSE39582 | Colon cancer | Human | Colon | 585 | 23700391 |
| GSE26253 | Colon cancer | Human | Colon | 432 | 24598828 |
| GSE44076 | Colon cancer | Human | Colon | 246 | 25215506 |
| GSE17536 | Colon cancer | Human | Colon | 177 | 19914252 |
| GSE11223 | Ulcerative colitis | Human | Colon | 202 | 18523026 |
| GSE20881 | Crohn’s disease | Human | Colon | 172 | 20848455 |
| GSE48634 | Ulcerative colitis | Human | Colon | 171 | 25171508 |