. 2019 Nov 9;20:833. doi: 10.1186/s12864-019-6215-y

Table 2.

List of genes within chloroplast genomes of six Hosta species in Korea. ×2 refers to genes duplicated in the IR regions

Category	Group of genes	Names of genes
Transcription & Translation	Ribosomal protein, LSU	rpl33, rpl20, rpl36, rpl14, rpl16 (× 2)^a, rpl22, rpl2(× 2)^a, rpl23(× 2), rpl32
	Ribosomal protein, SSU	rps16, rps2, rps14, rps4, rps18, rps12(× 2)^a, rps11, rps8, rps3, rps19(× 2), rps7(× 2), rps15
	RNA polymerase	rpoC2, rpoC1^a, rpoB, rpoA
	Ribosomal RNAs	rrn16(×2), rrn23(× 2), rrn4.5(× 2), rrn5(× 2)
	Transfer RNAs	trnL-UAA^a, trnF-GAA, trnV-UAC^a, trnM-CAU, trnW-CCA, trnP-UGG, trnH-GUG(×2), trnI-CAU(× 2), trnL-CAA(× 2), trnV-GAC(× 2), trnI-GAU(× 2)^a, trnA-UGC(× 2)^a, trnR-ACG(× 2), trnN-GUU(× 2), trnL-UAG, trnR-UCU, trnD-GUC, trnC-GCA, trnQ-UUG, trnE-UUC, trnG-UCC, trnK-UUU^a, trnfM-CAU, trnS-GCU, trnS-UGA, trnS-GGA, trnT-GGU, trnT-UGA, trnY-GUA, trnG-GCC^a, trnT-UGU
Photosynthesis	Photosystem I	psaB, psaA, psaI, psaJ, psaC
	Photosystem II	psbA, psbK, psbI, psbM, psbD, psbC, psbZ, psbJ, psbL, psbF, psbE, psbB, psbT, psbN, psbH, petN
	NADH dehydrogenase	ndhJ, ndhK, ndhC, ndhB(×2)^a, ndhF, ndhD, ndhE, ndhG, ndhI, ndhA^a, ndhH
	Cytochrome b6/f complex	petN, petA, petL, petG, petB^a, petD^a
	ATP synthase	atpA, atpF^a, atpH, atpI, atpE, atpB
	Rubisco large subunit	rbcL
ATP-dependent protease subunit P		clpP^a
Other genes	Chloroplast envelope membrane protein	cemA
	Maturase	matK
	c-type	ccsA
	Subunit Acetyl- CoA-Carboxylate	accD
	Photosystem I assembly& stability	ycf3^b, ycf4
Conserved ORFs		ycf1, ycf2(×2)
Pseudogenes		infA^ψ (MIN/CAP), ycf15^ψ (MIN/CAP), rps16^ψ (JON), rps11^ψ (JON)

Abbreviations: LSU rRNA Large subunit ribosomal ribonucleic acid, SSU rRNA Small subunit ribosomal ribonucleic acid

Gene marked with asterisks are the gene with a single (^a) or double (^b) introns. ^ψPseudogenes are presented in the species indicated with parentheses. See Table 1 legend for the species acronyms