Table 2.
List of 35 key genes in four gene chips
| Gene | GSE28735 | GSE15471 | GSE16515 | GSE101448 | ||||
|---|---|---|---|---|---|---|---|---|
| logFC | adj P | logFC | adj P | logFC | adj P | logFC | adj P | |
| CTRL | −2.19 | 2.22E-5 | −2.92 | 8.42E-4 | −3.92 | 7.73E-3 | −5.18 | 2.7E-22 |
| SYCN | − 1.30 | 1.94E-4 | −2.57 | 7.54E-3 | −3.78 | 2.59E-2 | −5.63 | 8.31E-21 |
| PRSS3 | −1.24 | 5.67E-4 | −1.54 | 3.08E-2 | −2.22 | 3.85E-2 | −3.60 | 7.79E-12 |
| CTRC | −2.61 | 4.62E-5 | −1.56 | 8.09E-2 | −3.40 | 3.93E-2 | −3.45 | 3.77E-10 |
| CELA2B | −2.21 | 1.12E-4 | −2.38 | 8.13E-3 | −3.42 | 1.53E-2 | −4.38 | 1.08E-23 |
| CEL | −2.51 | 1.36E-4 | −1.27 | 1.86E-1 | −3.51 | 3.85E-2 | −3.52 | 1.61E-10 |
| PNLIPRP1 | −2.83 | 3.73E-5 | −2.23 | 1.32E-2 | −4.20 | 5.89E-3 | −5.45 | 6.64E-14 |
| CPA1 | −1.87 | 1.39E-3 | −1.27 | 2.22E-1 | −3.33 | 7.09E-2 | −4.96 | 3.24E-13 |
| CPA2 | −2.45 | 2.78E-4 | −1.70 | 5.76E-2 | −3.98 | 1.26E-2 | −4.94 | 1.90E-14 |
| GNMT | −1.41 | 1.77E-4 | −2.85 | 1.03E-6 | −3.07 | 3.94E-4 | −4.83 | 5.59E-19 |
| GATM | −1.46 | 7.98E-4 | −0.93 | 8.45E-6 | −2.72 | 1.23E-3 | −3.08 | 1.52E-14 |
| MAT1A | −0.80 | 2.28E-4 | −1.50 | 9.31E-08 | −1.41 | 6.06E-3 | −1.27 | 8.05E-5 |
| GCAT | −0.57 | 6.11E-4 | −1.55 | 6.87E-7 | −1.46 | 6.00E- | −2.48 | 1.11E-6 |
| ABAT | −1.12 | 4.47E-7 | −1.55 | 1.05E-6 | −2.19 | 6.19E-5 | −1.84 | 2.21E-14 |
| GPT2 | −0.87 | 1.20E-3 | −1.43 | 5.99E-6 | −1.48 | 1.56E-2 | −2.13 | 1.86E-13 |
| ADHFE1 | −1.09 | 3.11E-8 | −0.75 | 3.05E-8 | −1.31 | 8.46E-7 | −2.21 | 9.28E-11 |
| PM20D1 | −1.40 | 7.49E-5 | −2.48 | 2.43E-7 | −2.01 | 4.71E-3 | −0.70 | 5.67E-3 |
| PHGDH | −0.88 | 6.05E-5 | −1.08 | 8.35E-7 | −1.15 | 6.47E-3 | −1.23 | 1.03E-6 |
| PSAT1 | −0.98 | 1.82E-3 | −2.29 | 5.09E-8 | −1.93 | 2.16E-3 | −1.12 | 2.48E-5 |
| BCAT1 | −0.52 | 2.79E-2 | −1.07 | 6.20E-3 | −1.06 | 5.80E-2 | −1.62 | 2.67E-8 |
| PRDX4 | −0.64 | 4.42E-4 | −1.22 | 2.09E-6 | −1.35 | 2.82E-4 | −1.08 | 4.64E-2 |
| ERP27 | −2.50 | 2.31E-5 | −2.28 | 2.08E-3 | −3.42 | 5.15E-3 | −4.16 | 2.57E-15 |
| PDIA2 | −2.12 | 7.91E-6 | −1.43 | 1.11E-6 | −3.48 | 1.06E-3 | −5.23 | 1.38E-21 |
| MT1H | −0.70 | 1.20E-5 | −1.02 | 1.17E-5 | −1.87 | 3.05E-6 | −3.53 | 1.39E-17 |
| MT1F | −1.00 | 4.95E-5 | −1.23 | 3.68E-6 | −1.86 | 8.16E-6 | −2.32 | 1.79E-7 |
| MT1G | −1.15 | 4.34E-5 | −1.65 | 7.28E-8 | −2.15 | 4.75E-6 | −2.53 | 3.04E-10 |
| COL5A1 | 0.77 | 4.83E-6 | 3.22 | 3.83E-15 | 1.81 | 1.71E-3 | 1.99 | 3.02E-8 |
| COMP | 1.44 | 1.47E-6 | 3.54 | 1.28E-14 | 2.17 | 5.19E-3 | 2.45 | 1.59E-7 |
| CDH11 | 1.43 | 2.19E-7 | 2.55 | 8.28E-14 | 1.72 | 2.56E-3 | 2.20 | 5.03E-4 |
| COL5A2 | 1.33 | 9.57E-6 | 3.54 | 1.69E-15 | 1.71 | 1.43E-3 | 1.74 | 8.66E-6 |
| FN1 | 2.31 | 2.65E-10 | 2.80 | 2.66E-17 | 2.30 | 5.10E-6 | 1.45 | 4.92E-9 |
| SULF1 | 1.94 | 9.20E-9 | 4.23 | 1.17E-19 | 2.56 | 6.86E-5 | 2.53 | 2.47E-6 |
| COL1A2 | 1.58 | 7.27E-6 | 3.43 | 1.18E-16 | 1.68 | 7.98E-4 | 1.57 | 7.13E-11 |
| FAP | 1.44 | 1.44E-5 | 3.26 | 3.72E-16 | 1.84 | 4.73E-3 | 2.23 | 1.03E-6 |
| POSTN | 2.67 | 1.13E-10 | 2.94 | 1.58E-14 | 2.75 | 6.46E-5 | 3.08 | 1.76E-12 |
logFC:log2(fold change) (tumor compared to normal tissue); adj P: adjusted P value