Table 1.
Summary of genomic methods and legume–pathogen interaction studies.
| Plant | Pathogen | Methods | References |
|---|---|---|---|
| Legume–fungus Interactions | |||
| Common bean | Fusarium oxysporum f. sp. phaseoli | cDNA-AFLP | Xue et al., 2015 |
| Soybean | Fusarium oxysporum Schltdl | NGS | Lanubile et al., 2015; Chang et al., 2019 |
| Chickpea | Fusarium oxysporum f. sp. ciceri | EST analysis | Ashraf et al., 2009 |
| Chickpea | Fusarium oxysporum f. sp. ciceri | cDNA-AFLP | Nimbalkar et al., 2006; Gupta et al., 2009; Gupta et al., 2010 |
| Chickpea | Fusarium oxysporum f. sp. ciceri | cDNA-RAPD | Nimbalkar et al., 2006; Gurjar et al., 2012 |
| Chickpea | Fusarium oxysporum f. sp. ciceri | Long-SAGE | Upasani et al., 2017 |
| Chickpea | Fusarium oxysporum f. sp. ciceri | NGS | Gupta et al., 2017 |
| Chickpea | Fusarium oxysporum f. sp. ciceri | Microarray | Ashraf et al., 2018 |
| M. truncatula | Phymatotrichopsis omnivora | Microarray | Uppalapati et al., 2009 |
| M. truncatula | Botrytis fabae | qPCR-based transcription factor platform analysis | Villegas-Fernández et al., 2014 |
| Soybean | Rhizoctonia solani | NGS | Copley et al., 2017 |
| M. truncatula | Mycosphaerella pinodes | Microarray | Fondevilla et al., 2011 |
| Pea | Mycosphaerella pinodes | DeepSuperSAGE | Fondevilla et al., 2014 |
| Grass pea | Ascochyta lathyri | DeepSuperSAGE | Almeida et al., 2015 |
| Fava bean | Ascochyta fabae | DeepSuperSAGE | Madrid et al., 2013 |
| Fava bean | Ascochyta fabae | De novo transcriptome | Ocaña et al., 2015 |
| Cowpea | Phakopsora pachyrhizi | SuperSAGE/DeepSuperSAGE - NGS | |
| M. truncatula | Colletotrichum trifolii, C. lindemuthianum, C. higginsianum | Microarray | Jaulneau et al., 2010 |
| Common bean | Colletotrichum lindemuthianum | EST analysis | Oblessuc et al., 2012 |
| Common bean | Colletotrichum lindemuthianum | NGS | Padder et al., 2016 |
| Lentil | Colletotrichum lentis | Bhadauria et al., 2017 | |
| Soybean | Phakospora pachyrhizi | SSH-cDNA | Choi et al., 2008 |
| Glycine tomentella | Phakospora pachyrhizi | Microarray | Soria-Guerra et al., 2010a; Soria-Guerra et al., 2010b |
| Soybean | Phakospora pachyrhizi | Microarray | Van De Mortel et al., 2007; Panthee et al., 2009; Morales et al., 2013 |
| Soybean | Phakopsora pachyrhizi | SuperSAGE | Kido et al., 2010 |
| M. truncatula | Phakospora pachyrhizi | Microarray | Ishiga et al., 2015 |
| M. truncatula | Colletotrichum trifolii, Erysiphe pisi, Phytophthora medicaginis | Microarray | Samac et al., 2011 |
| M. truncatula | Uromyces striatus | qPCR-based transcription factor platform | Madrid et al., 2010 |
| Legume–oomycete interactions | |||
| Soybean | Phytophthora sojae | cDNA microarray | Moy et al., 2004 |
| Soybean | Phytophthora sojae | Comparative EST analysis | |
| Soybean | Phytophthora sojae | Microarray | Zhou et al., 2009 |
| Soybean | Phytophthora sojae | SSH-cDNA - NGS, | Xu et al., 2012 |
| Soybean | Phytophthora sojae | dot blot hybridizations | |
| Soybean | Phytophthora sojae | Subtractive EST analysis | Narayanan et al., 2009 |
| Soybean | Phytophthora sojae | Microarray | Guo et al., 2011; Lin et al., 2014 |
| M. truncatula | Aphanomyces euteiches | cDNA - AFLP, cDNA - SSH | Nyamsuren et al., 2003 |
| Pea | Aphanomyces euteiches; Phytophthora pisi | Microarray | Hosseini et al., 2015 |
| Pea | Peronospora viciae f. sp. pisi | SSH-cDNA | Feng et al., 2012 |
| Legume–bacteria interactions | |||
| Soybean | Xanthomonas axonopodis pv. glycines | NGS | Kim et al., 2011 |
| Peanut | Ralstonia solanacearum | cDNA library analysis | Huang et al., 2012 |
| Peanut | Ralstonia solanacearum | NGS | Chen et al., 2014a |
| Soybean | Pseudomonas syringae pv. glycinea | cDNA microarray | Zou et al., 2005 |
| M. sativa | Pseudomonas syringae pv. syringae | NGS | Nemchinov et al., 2017 |
| Legume–nematode interactions | |||
| Soybean | Heterodera glycines | cDNA microarray | Alkharouf et al., 2004 and Khan et al., 2004; Alkharouf et al., 2006 |
| Soybean | Heterodera glycines | Microarray | Ithal et al., 2007; Klink et al., 2007a; Klink et al., 2009a; Klink et al., 2009b; Klink et al., 2010; Kandoth et al., 2011; Matsye et al., 2011 |
| Soybean | Heterodera glycines | NGS | Tian et al., 2017 |
| Black soybean | Heterodera glycines | NGS | Li et al., 2017 |
| Pinto bean | Heterodera glycines | NGS | Jain et al., 2016 |
| Soybean | Meloidogyne incognita | NGS | Beneventi et al., 2013 |
| Soybean | Meloidogyne incognita | Microarray | Ibrahim et al., 2011 |
| M. sativa | Meloidogyne incognita | cDNA libraries | Potenza et al., 2001 |
| M. sativa | Meloidogyne incognita | NGS | Postnikova et al., 2015 |
| Bean | Meloidogyne incognita | NGS | Santini et al., 2016 |
| Wild peanut | Meloidogyne arenaria | NGS | Guimaraes et al., 2015 |
| Legume-virus interactions | |||
| Soybean | Soybean mosaic virus | cDNA microarray | Babu et al., 2008 |
| Soybean | Soybean mosaic virus | Microarray | Bilgin et al., 2008 |
| Soybean | Soybean mosaic virus | NGS | Chen et al., 2016; Chen et al., 2017; Zhou et al., 2018 |
| Common bean | Mungbean yellow mosaic India virus | High-throughput sequencing | Patwa et al., 2018 |