Skip to main content
. 2019 Sep 26;8(10):377. doi: 10.3390/plants8100377

Table 4.

Results of association mapping between CG Single nucleotide polymorphisms (SNP) and production and oil quality traits in oil palm hybrids.

CG SNP Position Production Traits AM Model p Value %VA Effect
BKACPII_1 C10: 22949607 BW MLM_Q 0.013 13.9 6.812
BY MLM_Q 0.037 26.2 538.811
EgNAC C05: 40852639 OildM MLM_PCA 0.044 18.3 −5.524
OilB MLM_PCA 0.046 8.9 −3.256
LIPOIC C07: 18432097 OilfM GLM_Q 0.042 10.9 −2.387
M2200 C13: 12503450 OildM MLM_PCA 0.009 19.9 13.384
PKP-ALPHA C01: 40816686 OilB MLM_PCA 0.007 10.8 −9.339
SEQUI U02: 19591286 BW MLM_Q 0.015 14.1 2.319
TO1 U02: 79752170 BN MLM_Q 0.020 24.4 −45.134
BW MLM_Q 0.033 14.8 −6.218
CG Name SNP Position Quality Traits AM Model p Value %VA Effect
ATAGB1_ML * C13: 103569 SSS MLM_Q 0.022 7.2 −0.614
Mono-Un MLM_PCA 0.008 20.4 −5.291
Poly-Un MLM_PCA 0.047 10.7 1.136
ATP3 U05: 50035832 Mono-Un MLM_PCA 0.050 18.7 −5.726
Poly-Un MLM_PCA 0.003 13.7 2.549
atpB CT: 54552 Delta MLM_Q 0.046 11.6 −6.913
BnC8_761 C08: 4351912 Delta3 MLM_Q 0.008 17.3 33.287
OA MLM_PCA 0.025 20.1 −2.488
UUU MLM_PCA 0.048 21.8 −2.250
CA3 C02: 35978226 Delta MLM_Q 0.045 11.6 15.740
EgNAC C05: 40852136 OA MLM_PCA 0.015 20.6 2.890
Sat MLM_PCA 0.042 17.2 −1.990
SUS MLM_PCA 0.014 23.2 −2.189
SUU MLM_PCA 0.019 14.3 2.125
UUU MLM_PCA 0.007 23.5 3.246
C05: 40852594 Mono-Un MLM_PCA 0.044 18.8 3.568
OA MLM_PCA 0.005 21.7 4.826
Poly-Un MLM_PCA 0.010 12.3 −1.310
SUS MLM_PCA 0.009 23.6 −3.376
UUU MLM_PCA 0.003 24.3 5.081
C05: 40852639 Car MLM_Q 0.026 26.9 −173.576
EOCHYB C04: 37534489 Alpha MLM_Q 0.027 14.6 −50.440
GLUT1 C12: 28135330 OA MLM_PCA 0.040 19.7 −2.823
C12: 28135361 OA MLM_PCA 0.040 19.7 −2.823
C12: 28135379 OA MLM_PCA 0.040 19.7 −2.823
HtC2_11412 C08: 25294023 Delta3 MLM_Q 0.036 15.7 27.356
SUU MLM_PCA 0.047 13.4 −1.552
C08: 25294107 Delta3 MLM_Q 0.015 16.7 29.133
SSS MLM_Q 0.049 6.1 0.290
HtC2_1255C2-411 C02: 43975856 SSS MLM_Q 0.046 6.1 0.529
C02: 43975982 SSS MLM_Q 0.046 6.1 0.529
HtC7_9200 C06: 41269483 Toc GLM_Q 0.042 13.6 157.269
Tocph MLM_Q 0.046 13.2 35.249
C06: 41269559 Car MLM_Q 0.005 28.3 −158.848
JC35 C13: 22806955 Car MLM_Q 0.024 27.0 −109.838
JC55 C05: 14759308 IV MLM_PCA 0.007 15.1 7.826
LIPOIC C07: 18431998 Gamma GLM_Q 0.041 7.0 −7.841
Mono-Un MLM_PCA 0.039 18.9 −2.700
OA MLM_PCA 0.024 20.2 −2.842
Poly-Un MLM_PCA 0.037 11.0 0.782
C07: 18432097 Gamma GLM_Q 0.003 11.6 −11.135
Toc GLM_Q 0.043 13.5 −184.481
Toc3 GLM_Q 0.027 16.3 −173.161
Delta3 MLM_Q 0.033 16.0 −27.292
PAT_2 C09: 34725045 Alpha MLM_Q 0.014 15.5 49.496
Delta MLM_Q 0.027 12.1 9.758
Tocph MLM_Q 0.005 15.4 70.245
PAT_2_ML C02: 23775894 Poly-Un MLM_PCA 0.035 11.0 −0.877
PAT_6 C08: 27075521 Car MLM_Q 0.040 26.6 −163.806
PDHB C01: 51857834 IV MLM_PCA 0.027 13.8 3.407
PKP-ALPHA C01: 40816686 UUU MLM_PCA 0.034 22.1 −7.962
SEQUI U02: 19591232 Toc GLM_Q 0.031 13.9 260.781
Toc3 GLM_Q 0.040 15.9 212.755
Gamma3 MLM_Q 0.015 14.1 142.540
SSS MLM_Q 0.028 6.6 0.504
IV MLM_PCA 0.037 13.5 −2.828
Poly-Un MLM_PCA 0.020 11.6 −1.139
U02: 19591286 IV MLM_PCA 0.020 14.1 −3.630
SHELL C02: 3078054 Alpha MLM_Q 0.029 14.6 66.367
Delta MLM_Q 0.028 12.1 17.751
Tocph MLM_Q 0.019 14.1 90.283
C02: 3078154 Toc GLM_Q 0.031 13.9 213.715
Toc3 GLM_Q 0.046 15.8 169.457
Alpha MLM_Q 0.048 14.2 37.502
Delta3 MLM_Q 0.026 16.1 32.474
Gamma3 MLM_Q 0.023 13.7 109.420
Tocph MLM_Q 0.029 13.7 51.563
TO1 U02: 79752182 Gamma3 MLM_Q 0.030 13.6 136.526
U02: 79752184 Gamma3 MLM_Q 0.030 13.6 136.526
TO3 C03: 13885419 Car MLM_Q 0.029 27.0 −157.239

Legend: CG Name: internal name of the CG; SNP position: genome location of the SNP; Trait: associated trait; Association Mapping (AM) Model: best fitting model for AM; p value: observed error probability value for the model; %VA: percentage of the total variance explained by the model; Effect: effect of the marker.