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. 2019 Sep 24;7(10):388. doi: 10.3390/microorganisms7100388

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© 2019 by the authors.

Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).

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Alignment/mapping-based analysis of 147 Acinetobacter clinical isolates using the AR_0078 genome (ST229) as reference. (A) Phylogeny tree generated from core SNVs analysis. Neighbor-joining method is used, and branch length is ignored. The shadowed reference is AR_0078. (B–D) Overview of clinical isolates from principal component analysis. B: all 147 isolates; C: 26 ST2 isolates; and D: 111 ST229 isolates with AR_0078 excluded. Four main sub-clusters are identified in ST2 isolates: sub1, sub2, sub3 and sub4.