Table 2.
Detection of QTL associated with plant height in two populations across the three different environments by CIM method.
| Population | QTL a | Chr. | Position (cM) | Marker Interval | LOD b | Confidence interval (cM) c | Physical Region (Mb) d | A e | R2 (%) f | Env. | ReportedQTL/Gene g |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MT | qPH-2-1MT (QPH-2) | 2 | 19.3 | T_bin192–T_bin193 | 3.8 | 18.1–21.5 | 4.5–5.2 | −2.7 | 3.0 | 2014YC | Plant height 13-1 |
| qPH-6-2MT | 6 | 82.8 | T_bin992–T_bin993 | 28.6 | 82.6–83.0 | 19.1–21.9 | −9.8 | 29.3 | 2014YC | E1 | |
| 83.0 | T_bin994–T_bin995 | 26.9 | 82.7–83.2 | −13.9 | 19.4 | 2014JP | |||||
| 83.0 | T_bin994–T_bin995 | 14.1 | 82.7–83.3 | −7.8 | 13.7 | 2012JP | |||||
| qPH-6-3MT | 6 | 87.1 | T_bin1020–T_bin1021 | 26.4 | 87.0–87.4 | 42.9–45.4 | −12.7 | 19.2 | 2014JP | Plant height 3-2 | |
| (QPH-6) | 89.8 | T_bin1028–T_bin1029 | 13.3 | 89.6–92.7 | −7.0 | 13.0 | 2012JP | ||||
| qPH-15-1MT | 15 | 60.7 | T_bin2638–T_bin2639 | 3.2 | 59.3–61.0 | 14.4–15.4 | 3.6 | 1.8 | 2014JP | Novel | |
| qPH-16-1MT | 16 | 67.9 | T_bin2836–T_bin2837 | 3.4 | 66.7–68.5 | 30.3–30.8 | −2.5 | 2.7 | 2014JP | E9 | |
| qPH-19-1MT | 19 | 97.7 | T_bin3421–T_bin3422 | 23.8 | 97.0–98.7 | 44.9–45.5 | 7.6 | 22.2 | 2014YC | Dt1 | |
| (QPH-19) | 97.3 | T_bin3420–T_bin3421 | 55.7 | 96.5–97.8 | 19.4 | 50.7 | 2014JP | ||||
| 97.3 | T_bin3420–T_bin3421 | 31.2 | 96.5–97.9 | 11.0 | 33.9 | 2012JP | |||||
| ZM | qPH-5-1ZM | 5 | 51.4 | Z_bin554–Z_bin555 | 2.9 | 48.9–53.4 | 32.1–32.9 | −2.9 | 6.1 | 2014JP | Plant height 26-1 |
| qPH-6-2ZM | 6 | 117.7 | Z_bin718–Z_bin719 | 6.5 | 117.3–118.7 | 37.8–43.9 | −7.1 | 11.3 | 2012JP | Plant height 3-2 | |
| (QPH-6) | 118.6 | Z_bin719–Z_bin720 | 7.5 | 117.3–122.8 | −8.6 | 12.7 | 2014JP | ||||
| qPH-7-1ZM | 7 | 100.2 | Z_bin879–Z_bin880 | 3.0 | 98.6–101.0 | 38.0–38.6 | 3.0 | 6.5 | 2014YC | Plant height 37-5 | |
| qPH-9-1ZM | 9 | 110.6 | Z_bin1195–Z_bin1196 | 4.6 | 109.7–111.5 | 40.7–42.4 | −5.3 | 7.6 | 2012JP | Plant height 33-5 | |
| 108.6 | Z_bin1192–Z_bin1193 | 2.8 | 106.6–111.9 | −4.3 | 3.9 | 2014JP | |||||
| qPH-10-1ZM | 10 | 104.2 | Z_bin1330–Z_bin1331 | 3.4 | 102.7–106.8 | 43.6–44.4 | 4.8 | 5.5 | 2012JP | E2 | |
| 104.2 | Z_bin1330–Z_bin1331 | 4.5 | 101.7–105.1 | 6.1 | 7.2 | 2014JP | |||||
| qPH-17-1ZM (QPH-17) | 17 | 134.1 | Z_bin2179–Z_bin2180 | 2.7 | 126.0–135.1 | 40.3–41.9 | −4.1 | 4.2 | 2012JP | Novel | |
| 134.1 | Z_bin2179–Z_bin2180 | 5.1 | 132.7–135.1 | −6.4 | 8.2 | 2014JP | |||||
| 127.7 | Z_bin2175–Z_bin2176 | 3.8 | 126.9–128.6 | −3.5 | 9.0 | 2014YC | |||||
| qPH-18-1ZM | 18 | 88.3 | Z_bin2283–Z_bin2284 | 4.0 | 85.1–91.0 | 53.5–54.6 | 3.6 | 9.3 | 2014YC | Dt2 | |
| qPH-19-1ZM | 19 | 108.8 | Z_bin2431–Z_bin2432 | 15.0 | 108.4–109.5 | 44.6–45.9 | 11.4 | 30.9 | 2012JP | Dt1 | |
| (QPH-19) | 108.8 | Z_bin2431–Z_bin2432 | 10.8 | 108.2–110.1 | 10.2 | 19.7 | 2014JP |
a QTLs detected in different environments at the same; adjacent or overlapping marker intervals were considered the same QTL. b LOD value at the peak > 2.5. c 1-LOD support confidence intervals (confidence interval length, cM). d physical location of the confidence interval of QTLs in the Glycine max Wm82.a1 reference genome (Mb). e The additive effect of QTLs. The positive values indicated that the allele of the QTL came from the common parent M8206 can increase plant height. While negative the values indicate that the allele of the QTL came from other parents that can increase plant height. f Phenotypic variance (%) explained by the QTL. g The name of QTL for plant height in Soybase [13] or the gene name which associated with plant height within the QTL interval.