Table 2. LncRNAs dysregulated in common between the cultured T_CM and the bystander model.

			Cultured TCM model			Bystander model
ENSEMBL ID	Gene Symbol	lncRNA type	logFC	FC	FDR	logFC	FC	FDR
ENSG00000173727	CMB9-22P13.1	lincRNA	0.86	1.81	0.0115	0.52	1.43	0.0368
ENSG00000232160	RAP2C-AS1	antisense	0.44	1.35	0.0465	0.72	1.65	0.0021
ENSG00000245532	NEAT1	lincRNA	0.50	1.41	0.0438	0.37	1.30	0.0413
ENSG00000246526	RP11-539L10.2	lincRNA	-0.66	0.63	0.0377	-0.67	0.63	0.0031
ENSG00000249859	PVT1	lincRNA	0.37	1.29	0.0030	0.58	1.49	0.0000
ENSG00000253878	RP11-347C18.3	sense_intronic	0.73	1.66	0.0014	1.09	2.12	0.0015
ENSG00000266208	CTD-2267D19.3	antisense	0.41	1.32	0.0470	1.15	2.22	0.0105
ENSG00000267702	RP11-53B2.2	sense_intronic	0.51	1.42	0.0253	0.56	1.48	0.0125
ENSG00000271122	RP11-379H18.1	antisense	0.38	1.30	0.0145	0.37	1.29	0.0107

logFC, log₂-transformed fold change of counts per million in the RNA-Seq data; FC, fold change; FDR, false discovery rate-corrected p-value.