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. 2019 Aug 24;11(4):400–409. doi: 10.1007/s12560-019-09402-3

Table 2.

Norovirus strains identified in sewage samples using method A

Sample Contig length Genotype* Coverage**
E1777 7278 GIIP21-GII.3 19.586
7484 GIIP7-GII.6 99.576
6828 GIIPe-GII.4syd-v2 23.144
7497 GIIPe-GII4syd 21.732
7648 GIP3-GI.3 16.817
E1797 7343 GIIP17-GII.7 85.503
7431 GIIP7-GII.6 47.253
3467 GIP9-GI.9 12.576
7679 GIPb-GI.6 71.396
E1854 1582 GIIP16-GII.13 12.72
6509 GIIP17-GII.17 8.225
1221 GIIPg 8.663
7641 GIPb-GI.6 15.532
3687 GIV 12.327

*Sequences were identified using the online norovirus genotyping tool v2.0 (Kroneman et al. 2011)

**Coverage was calculated using Bowtie2 (Langmead et al. 2012)