Table 4.
Human enteric viruses detected using method B and C
| Sample | Method B | Method C | ||||
|---|---|---|---|---|---|---|
| Virus | Contig | Genotype | Virus | Contig | Genotype* | |
| S570 | Norovirus | 7609 | GIIPe-GII.4 | Norovirus | 6976 | GIIPe-GII.4 |
| E1887 | Sapovirus | 7414 | GI.2 | Sapovirus | 7491 | GI.2 |
| Norovirus | 3241 | GIIP22-GII.17 | Norovirus | 2366 | GII.P22 | |
| Norovirus | 2961 | GII | Norovirus | 2129 | GII | |
| Norovirus | 2996 | GII.P7-GII.17 | Norovirus | 3126 | GII.P17-GII.17 | |
| Norovirus | 3024 | GII.P17-GII.6 | ||||
| Rotavirus | 836 | Rotavirus | 3283 | G9[P8] | ||
| Astrovirus | 3860 | Type 2 | Astrovirus | 6519 | Type 2 | |
| Husavirus | 494 | Sp.16915_89 | ||||
| E1919 | Norovirus | 4598 | GII.P16-GII.2 | Norovirus | 1028 | GIIP16 |
| Norovirus | 2692 | GII | Norovirus | 3004 | GII.P16-GII.4 syd | |
| Sapovirus | 1209 | GII.3 | ||||
| Astrovirus | 6810 | Type 1 | Astrovirus | 6412 | Type 1 | |
| E1920 | Norovirus | 2239 | GII | Norovirus | 510 | GII.2 |
| Norovirus | 332 | GI–GI.3 | ||||
| Astrovirus | 6782 | Type 1 | Astrovirus | 1878 | Type 1 | |
| E1927 | Norovirus | 944 | GII.2 | Norovirus | 631 | GII.Postdam |
| Norovirus | 616 | GII | ||||
| Norovirus | 442 | GI | Norovirus | 631 | GI–GI.3 | |
| Sapovirus | 571 | GI.1 Seoul | ||||
| Astrovirus | 1878 | Type 1 | Astrovirus | 6588 | Type 5 | |
| Astrovirus | 3948 | Type 1 | ||||
| Aichi virus | 2692 | Type 1 | ||||
*Strain identification was assigned using the online Norovirus genotyping tool v2.0 (Kroneman et al. 2011)