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. 2019 Nov 5;10:1068. doi: 10.3389/fgene.2019.01068

Table 3.

Quantitative trait loci (QTL) associated with gestation length in the Limousin population*.

BTA Start End No SNP <10-5 Strongest SNP Strongest SNP position + Allele + Allele Freq P-value No genes Candidate gene(s)
1 122986997 123110634 3 rs447613174a 123066190 G 0.993 3.66 x10-6 1 PLSCR1
3 93753165 93935370 4 rs439859698a 93785630 C 0.979 1.74 x10-6 2 PODN,SCP2
10 2496163 2604788 5 rs454662674a 2507549 C 0.977 5.10 x10-6 0
11 8496063 8536679 2 rs135066905a 8517491 T 0.620 4.71 x10-6 0
12 52544063 52635583 8 rs210280020d 52606206 T 0.968 1.93 x10-6 1 MYCBP2†
13 14035366 14356554 4 rs378665620a 14040023 T 0.993 4.06 x10-6 0
14 49080514 49117448 3 rs381835043a 49080514 C 0.994 7.20 x10-6 0
14 67771168 67873947 7 rs377884869c 67860285 T 0.114 8.00 x10-6 1 STK3†
15 78103186 78175580 79 rs379711605c 78144110 G 0.993 3.79 x10-6 1 C11orf49†
16 18332592 18395061 8 rs136829849a 18395061 A 0.741 3.57 x10-6 1 SNORA41
17 52403981 52418867 2 a 52403981 T 0.993 9.62 x10-6 0
22 36379583 36379663 2 a 36379661 C 0.013 7.83 x10-6 0
22 36460279 36460289 2 rs466503122a 36460289 C 0.014 1.62 x10-6 0
22 36467895 36467913 2 rs111742368a 36467913 G 0.015 3.24 x10-6 0
24 32458959 32472833 5 rs382939180a 32466786 G 0.809 2.91 x10-7 0 HRH4, IMPACT,OSBPLIA
24 37737096 37959307 4 rs208627686b 37834560 G 0.524 4.04 x10-6 4 MYL12B†
29 16015868 16099153 6 rs210179107a 16043942 C 0.872 5.13 x10-6 0
29 26742643 26788237 4 rs136687125b 26755302 C 0.720 5.68 x10-6 2 ENSBTAG00000010433†

*BTA, Bos taurus autosome number; SNP, name of single nucleotide polymorphism. No SNP <10-5 is the number of SNPs within the QTL with a p-value ≤ 1 × 10-5. P-value is the p-value of strongest SNP association. + Allele is the allele that had a positive SNP effect on gestation length. No of genes is the number of genes in the QTL. If no gene was present in the QTL the nearest functional candidate gene within 250 kb was chosen. aintergenic, bupstream gene variant, cintronic, dmissense, †gene in which the most significant SNP within the QTL was identified in.