Table 2.
Sample ID | Reads with Somatic Mutation | trans Reads | cis Reads | p Value |
---|---|---|---|---|
6001-1 | N/A | N/A | N/A | N/A |
6001-3 | 112 | 112 (100%)a | 0 (0%) | 1.9e-34 |
6001-7 | 155 | 153 (98.7%)a | 2 (1.3%) | 2.6e-43 |
6001-8 | 593 | 590 (99.5%)a | 3 (0.5%) | 1.0e-171 |
6001-10 | N/A | N/A | N/A | N/A |
6002-1 | 125 | 120 (96.0%)a | 5 (4.0%) | 5.5e-30 |
6002-2 | 3189 | 3160 (99.0%)b,c | 29 (1.0%) | 4.2e-890 |
6003-1 | 372 | 364 (97.8%)b,c | 6 (1.4%) | 1.4e-99 |
6005-1 | 2671 | 2653 (99.3%)b,c | 18 (0.7%) | 6.3e-759 |
Reads generated with PacBio long-read chemistry
Reads generated with Illumina short-read chemistry
These reads were also used for validation shown in Table 1