Table 2.
Extended Haplotype flanking CGGC-SCA10 core haplotype structure. The text in italics represents haplotype lineage specifically observed in AMR or EAS population. The other haplotype in Boxed manner represents prevalent haplotype 1-CGGC-A and 2-CGGC-B.
| AFR | AMR | EAS | EUR | SAS | ATTCTn Allele | ATTCTn length | Haplo-5’ | 5'ARM | SCA10 core haplotype | Haplo-3’ | 3’arm |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 0 | 1 | 0 | 0 | 0 | 8 | 14 | TTGGGCCTTGTGTCAGAAAAAAAAGGG | 16 | CGGC | TCACGTGTGAAGAGTAGCCCAACC | A |
| 0 | 1 | 0 | 0 | 0 | 7 | 13 | TTGAACTATGCGTCTCAAAAAAAAGAG | 13 | CGGC | TCACGTGTGAAGATTAGCCGAACC | B |
| 0 | 0 | 1 | 0 | 0 | 8 | 14 | TTGGACCTTGTGTCAGAAAAAAAAGAG | 4 | CGGC | TCACGTGTGAAGAGTAGCCGAACC | C |
| 0 | 0 | 2 | 0 | 0 | 7 | 13 | TTGGGCCTCGTGTCAGAAAGAAAAGAG | 8 | CGGC | TCACATCTGAAGATTGGCCGAACC | D |
| 0 | 0 | 1 | 0 | 0 | 7 | 13 | TTGGGCCATGCGTCAGAAAGGGAGGGG | 18 | CGGC | TCACGTGCGCGGAGTAGCCCAACC | H |
| 0 | 0 | 1 | 0 | 0 | 7 | 13 | TTGGGCCATGCGTCAGAAAGGGAGGGG | 18 | CGGC | TCACGTGTGCGGAGTAGCCCAACC | L |
| 1 | 0 | 0 | 0 | 0 | 1 | 6 | TTGGGCCTTGTGTCAGAAAAAAAAGAG | 1 | CGGC | TCACGTGTGAAGAGTAGCCCAACC | A |
| 0 | 0 | 0 | 0 | 1 | 2 | 8 | TTGGGCCTTGTGTCAGAAAAAAAAGAG | 1 | CGGC | TCACGTGTGAAGAGTAGCCCAACC | A |
| 0 | 0 | 0 | 2 | 1 | 3 | 9 | TTGGGCCTTGTGTCAGAAAAAAAAGAG | 1 | CGGC | TCACGTGTGAAGAGTAGCCCAACC | A |
| 4 | 0 | 0 | 6 | 1 | 4 | 10 | TTGGGCCTTGTGTCAGAAAAAAAAGAG | 1 | CGGC | TCACGTGTGAAGAGTAGCCCAACC | A |
| 24 | 10 | 1 | 17 | 10 | 5 | 11 | TTGGGCCTTGTGTCAGAAAAAAAAGAG | 1 | CGGC | TCACGTGTGAAGAGTAGCCCAACC | A |
| 28 | 24 | 7 | 23 | 33 | 6 | 12 | TTGGGCCTTGTGTCAGAAAAAAAAGAG | 1 | CGGC | TCACGTGTGAAGAGTAGCCCAACC | A |
| 11 | 20 | 15 | 6 | 16 | 7 | 13 | TTGGGCCTTGTGTCAGAAAAAAAAGAG | 1 | CGGC | TCACGTGTGAAGAGTAGCCCAACC | A |
| 3 | 3 | 3 | 2 | 7 | 8 | 14 | TTGGGCCTTGTGTCAGAAAAAAAAGAG | 1 | CGGC | TCACGTGTGAAGAGTAGCCCAACC | A |
| 0 | 0 | 2 | 0 | 1 | 9 | 15 | TTGGGCCTTGTGTCAGAAAAAAAAGAG | 1 | CGGC | TCACGTGTGAAGAGTAGCCCAACC | A |
| 2 | 0 | 0 | 0 | 0 | 5 | 11 | TTGGGCCATGTGTCAGAAAGAAAAGAG | 5 | CGGC | TCACGTGTGAAGAGTAGCCCAACC | A |
| 0 | 1 | 0 | 1 | 0 | 5 | 11 | TTGGGCCATGTGTCAGAAAAAAAAGAG | 6 | CGGC | TCACGTGTGAAGAGTAGCCCAACC | A |
| 1 | 0 | 0 | 1 | 0 | 6 | 12 | TTGGGCCATGTGTCAGAAAAAAAAGAG | 6 | CGGC | TCACGTGTGAAGAGTAGCCCAACC | A |
| 1 | 0 | 0 | 0 | 0 | 7 | 13 | TTGGGCCATGTGTCAGAAAAAAAAGAG | 6 | CGGC | TCACGTGTGAAGAGTAGCCCAACC | A |
| 5 | 0 | 0 | 0 | 0 | 8 | 14 | TTGGGCCATGTGTCAGAAAAAAAAGAG | 6 | CGGC | TCACGTGTGAAGAGTAGCCCAACC | A |
| 2 | 0 | 0 | 0 | 0 | 6 | 12 | TTGGGCCTTGTGTCAGAAAGAAAAGAG | 11 | CGGC | TCACGTGTGAAGAGTAGCCCAACC | A |
| 1 | 0 | 0 | 0 | 0 | 8 | 14 | TTGGGCCTTGTGTCAGAAAGAAAAGAG | 11 | CGGC | TCACGTGTGAAGAGTAGCCCAACC | A |
| 0 | 0 | 1 | 0 | 0 | 6 | 12 | TTGGGCCTCGTGTCAGAAAAAAAAGAG | 14 | CGGC | TCACGTGTGAAGAGTAGCCCAACC | A |
| 0 | 0 | 0 | 1 | 0 | 6 | 12 | TTGGGCCTTGTGTCAGAAAAAAAAGGG | 16 | CGGC | TCACGTGTGAAGAGTAGCCCAACC | A |
| 0 | 1 | 0 | 2 | 0 | 7 | 13 | TTGGGCCTTGTGTCAGAAAAAAAAGGG | 16 | CGGC | TCACGTGTGAAGAGTAGCCCAACC | A |
| 0 | 0 | 0 | 0 | 2 | 8 | 14 | TTGGGCCTTATGTCAGAAAAAAAAGAG | 20 | CGGC | TCACGTGTGAAGAGTAGCCCAACC | A |
| 1 | 0 | 0 | 0 | 0 | 7 | 13 | TTGGGCCTTGTGCCAGAAAAAAAAGAG | 22 | CGGC | TCACGTGTGAAGAGTAGCCCAACC | A |
| 0 | 0 | 0 | 0 | 1 | 2 | 8 | TTGGACTTTATGTCAGAAAAAAAAGAG | 2 | CGGC | TCACGTGTGAAGATTAGCCGAACC | B |
| 0 | 0 | 0 | 0 | 1 | 3 | 9 | TTGGACTTTATGTCAGAAAAAAAAGAG | 2 | CGGC | TCACGTGTGAAGATTAGCCGAACC | B |
| 1 | 0 | 0 | 1 | 0 | 4 | 10 | TTGGACTTTATGTCAGAAAAAAAAGAG | 2 | CGGC | TCACGTGTGAAGATTAGCCGAACC | B |
| 1 | 6 | 7 | 5 | 4 | 5 | 11 | TTGGACTTTATGTCAGAAAAAAAAGAG | 2 | CGGC | TCACGTGTGAAGATTAGCCGAACC | B |
| 0 | 10 | 15 | 12 | 11 | 6 | 12 | TTGGACTTTATGTCAGAAAAAAAAGAG | 2 | CGGC | TCACGTGTGAAGATTAGCCGAACC | B |
| 2 | 6 | 24 | 12 | 23 | 7 | 13 | TTGGACTTTATGTCAGAAAAAAAAGAG | 2 | CGGC | TCACGTGTGAAGATTAGCCGAACC | B |
| 0 | 2 | 7 | 1 | 5 | 8 | 14 | TTGGACTTTATGTCAGAAAAAAAAGAG | 2 | CGGC | TCACGTGTGAAGATTAGCCGAACC | B |
| 0 | 0 | 6 | 0 | 2 | 9 | 15 | TTGGACTTTATGTCAGAAAAAAAAGAG | 2 | CGGC | TCACGTGTGAAGATTAGCCGAACC | B |
| 1 | 0 | 0 | 0 | 0 | 4 | 10 | TTGGGCTATGTGTCAGAAAAAAAAGAG | 3 | CGGC | TCACGTGTGAAGATTAGCCGAACC | B |
| 0 | 1 | 0 | 0 | 0 | 5 | 11 | TTGGGCTTTGTGTCAGAAAAAAAAGAG | 7 | CGGC | TCACGTGTGAAGATTAGCCGAACC | B |
| 1 | 0 | 0 | 0 | 0 | 6 | 12 | TTGGGCTTTGTGTCAGAAAAAAAAGAG | 7 | CGGC | TCACGTGTGAAGATTAGCCGAACC | B |
| 0 | 0 | 0 | 2 | 0 | 5 | 11 | TTGGGCTTTATGTCAGAAAAAAAAGAG | 9 | CGGC | TCACGTGTGAAGATTAGCCGAACC | B |
| 0 | 0 | 0 | 1 | 0 | 6 | 12 | TTGGGCTTTATGTCAGAAAAAAAAGAG | 9 | CGGC | TCACGTGTGAAGATTAGCCGAACC | B |
| 0 | 1 | 0 | 1 | 0 | 6 | 12 | TTGAACTATGCGTCTCAAAAAAAAGAG | 13 | CGGC | TCACGTGTGAAGATTAGCCGAACC | B |
| 0 | 0 | 1 | 0 | 0 | 6 | 12 | TTGGACTATATGTCAGAAAAAAAAGAG | 15 | CGGC | TCACGTGTGAAGATTAGCCGAACC | B |
| 0 | 0 | 1 | 1 | 0 | 7 | 13 | TTGGACTATATGTCAGAAAAAAAAGAG | 15 | CGGC | TCACGTGTGAAGATTAGCCGAACC | B |
| 0 | 0 | 0 | 0 | 1 | 6 | 12 | TTGGGCCTTATGTCAGAAAAAAAAGAG | 20 | CGGC | TCACGTGTGAAGATTAGCCGAACC | B |
| 0 | 0 | 0 | 0 | 1 | 6 | 12 | TTGGACTTTATGTCAGAAAAAAAAGGG | 21 | CGGC | TCACGTGTGAAGATTAGCCGAACC | B |
| 0 | 0 | 0 | 0 | 1 | 6 | 12 | TTGGGCCTTGTGTCAGAAAAAAAAGAG | 1 | CGGC | TCACGTGTGAAGAGTAGCCGAACC | C |
| 0 | 0 | 1 | 0 | 0 | 7 | 13 | TTGGACTTTATGTCAGAAAAAAAAGAG | 2 | CGGC | TCACGTGTGAAGAGTAGCCGAACC | C |
| 0 | 0 | 0 | 0 | 1 | 4 | 10 | TTGGACCTTGTGTCAGAAAAAAAAGAG | 4 | CGGC | TCACGTGTGAAGAGTAGCCGAACC | C |
| 0 | 0 | 1 | 0 | 0 | 5 | 11 | TTGGGCCTCGTGTCAGAAAGAAAAGAG | 8 | CGGC | TCACATCTGAAGATTGGCCGAACC | D |
| 0 | 0 | 0 | 0 | 1 | 5 | 11 | CCGAGCCACGTGTCAGAAAAAAAAGAG | 10 | CGGC | TCACATCTGAAGAGTGTTGCGGTT | E |
| 1 | 0 | 0 | 0 | 0 | 6 | 12 | TTGGACTTTACGTTAGAAAAGGAGGAG | 12 | CGGC | TCACGTGTGAGGATTAGCCGAACC | F |
| 0 | 0 | 0 | 1 | 0 | 6 | 12 | CCGAGCCACGTGTCACAGGGAAAAGAG | 17 | CGGC | TCACGTGTGAAGAGTGGTGCGGTT | G |
| 0 | 0 | 0 | 0 | 1 | 6 | 12 | TTGGGCCATGCGTCAGAAAGGGAGGGG | 18 | CGGC | TCACGTGCGCGGAGTAGCCCAACC | H |
| 0 | 0 | 0 | 0 | 1 | 6 | 12 | TTGGGCCTTGCATCTGAAAAAAAAGAG | 19 | CGGC | GCACGTGTGAAGAGTAGCCCAACC | I |
| 0 | 0 | 0 | 0 | 1 | 7 | 13 | TTGGGCCTTGCATCTGAAAAAAAAGAG | 19 | CGGC | GCACGTGTGAAGAGTAGCCCAACC | I |
| 0 | 0 | 0 | 0 | 1 | 7 | 13 | TTGGACCATATGTCAGAAAAAAAAGAG | 24 | CGGC | GCACGTGTGAAGAGTAGCCCAACC | I |
| 0 | 0 | 0 | 0 | 2 | 6 | 12 | TTGGGCCTTGTGTCAGAAAAAAAAGAG | 1 | CGGC | TCACGTCTGAAGAGTAGCCCAACC | J |
| 1 | 0 | 0 | 0 | 0 | 7 | 13 | TTAGGGCTTGCGTCAGGAAAAAGAAAG | 23 | CGGC | TCAGGTGTGAAGGGCAGCCCAACC | K |
| 0 | 0 | 0 | 0 | 1 | 7 | 13 | TTGGGCCTTGTGTCAGAAAAAAAAGAG | 1 | CGGC | TCACATCTGAAGATTAGCCGAACC | M |
| 0 | 0 | 0 | 0 | 1 | 7 | 13 | TTGGACTTCATGTCAGAAAGAAAAGAG | 25 | CGGC | TCACGTGTGAAGATTGGCCGAACC | N |